CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 1
nucleus 2
mitochondrion 2
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
iPSORT:	plastid
MultiLoc:	nucleus
PProwler:	mitochondrion
TargetP:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra002946.1-P	Field mustard	nucleus	99.24	87.23
AT5G54910.1	Thale cress	nucleus	82.11	72.67
KRH14417	Soybean	cytosol, nucleus	44.5	55.11
PGSC0003DMT400057202	Potato	nucleus	61.93	53.64
Solyc07g064520.2.1	Tomato	nucleus	61.77	53.58
KRH73730	Soybean	nucleus	60.55	53.08
GSMUA_Achr6P00390_001	Banana	cytosol, mitochondrion	55.96	49.86
EER99450	Sorghum	nucleus	51.22	44.97
Zm00001d006497_P002	Maize	nucleus	50.0	43.72
Os07t0517000-01	Rice	nucleus	34.71	43.32
TraesCS2A01G222000.1	Wheat	mitochondrion, nucleus	49.24	42.42
TraesCS2B01G247500.1	Wheat	nucleus	49.08	42.07
TraesCS2D01G228000.1	Wheat	nucleus	49.08	42.02
CDY36514	Canola	nucleus	29.36	32.93
CDY08740	Canola	nucleus	29.36	32.32
CDY18530	Canola	nucleus	27.98	32.22
CDX92251	Canola	nucleus	27.98	32.16
CDX95512	Canola	nucleus	27.98	32.11
CDX82336	Canola	nucleus	27.98	31.94
CDX99342	Canola	nucleus	27.52	31.69
CDX75974	Canola	nucleus	27.98	31.44
CDY42845	Canola	cytosol	20.03	29.18
CDY47007	Canola	cytosol	20.03	29.18
CDY52844	Canola	cytosol	18.5	24.85
CDX96202	Canola	cytosol	10.4	24.46
CDX81759	Canola	cytosol	18.2	24.39
CDX70149	Canola	nucleus	21.87	23.91
CDY04952	Canola	nucleus	21.71	23.91
CDY14112	Canola	cytosol	21.71	23.91
CDY40740	Canola	cytosol	19.57	23.66
CDY44780	Canola	mitochondrion	19.57	22.15
CDX79974	Canola	nucleus	22.94	21.8
CDY23886	Canola	plasma membrane	22.78	21.26
CDY41525	Canola	mitochondrion	20.64	18.99
CDX84428	Canola	mitochondrion	20.49	18.95
CDX69933	Canola	cytosol	3.67	17.65
CDY40519	Canola	nucleus	20.18	17.41
CDX79187	Canola	cytosol	22.17	17.1
CDX68066	Canola	cytosol	22.17	17.02
CDY49890	Canola	mitochondrion	19.57	16.41
CDY45370	Canola	mitochondrion	19.57	16.37
CDY50846	Canola	nucleus	20.95	16.33
CDY53643	Canola	nucleus	20.8	16.11
CDY34979	Canola	nucleus, plastid	19.72	15.5
CDY52719	Canola	nucleus, plastid	19.57	15.44
CDY32273	Canola	nucleus	19.57	14.02
CDY21554	Canola	mitochondrion	19.72	9.49
CDX69935	Canola	mitochondrion	19.72	9.35

Protein Annotations

Gene3D:3.40.50.300	MapMan:35.1	GO:A0A078FX20	UniProt:A0A078FX20	EnsemblPlants:CDY17287	ProteinID:CDY17287
ProteinID:CDY17287.1	ncoils:Coil	InterPro:DEAD/DEAH_box_helicase_dom	InterPro:DUF4217	GO:GO:0000166	GO:GO:0003674
GO:GO:0003676	GO:GO:0003723	GO:GO:0003824	GO:GO:0004386	GO:GO:0005488	GO:GO:0005524
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005730	GO:GO:0016787
EnsemblPlantsGene:GSBRNA2T00095375001	InterPro:Helicase_ATP-bd	InterPro:Helicase_C	InterPro:IPR001650	InterPro:IPR014001	InterPro:P-loop_NTPase
PFAM:PF00270	PFAM:PF00271	PFAM:PF13959	ScanProsite:PS00039	PFscan:PS51192	PFscan:PS51194
PANTHER:PTHR24031	PANTHER:PTHR24031:SF54	InterPro:RNA-helicase_DEAD-box_CS	SMART:SM00487	SMART:SM00490	SMART:SM01178
SUPFAM:SSF52540	UniParc:UPI0004EDEDCF	SEG:seg	:	:	:

Description

BnaA10g09210DDEAD-box ATP-dependent RNA helicase 32 [Source:Projected from Arabidopsis thaliana (AT5G54910) UniProtKB/Swiss-Prot;Acc:Q9FFT9]

Coordinates

chrLK032072:-:68477..71308

Molecular Weight (calculated)

73922.0 Da

IEP (calculated)

8.531

GRAVY (calculated)

-0.529

Length

654 amino acids

Sequence
(BLAST)

001: MVDIQRAALP HALCGRDILG AARTGSGKTL AFVIPVLEKL HKERWGPEDG VGCIIISPTR ELAAQTFSVL NKVGKFHKFS AGLLIGGREG VDVEKERVNH
101: MNVLVCAPGR LLQHMDETPN FECSNLKILI LDEADRVLDS AFKGQLDPII SQLPKRRQTL LFSATQTKKV KDLARLSLRD PEYISVHAES VTATPTTLTQ
201: TVIIVPVEKK LDMLWSFIKS HLNYRILVFL STKKQVKFVH EAFNKLRPGI PLKSLHGKMS QEKRMGVYSQ FIERQSVLFC TDVLARGLDF DKLVDWVVQV
301: DCPEDVASYI HRVGRTARFN ASGKSLLFLT PSEEKMVERL QEARIPVKVT KANSDKLQEV SRLLASLLVN FPDLQTVAQR AFITYLRSIH KRRDKEIFDV
401: TKLSIEDFSA SLGLPFTPRI RFANLKTKKK GVFESSIALE PENDDEDNVV APTRVVKKDL LGEDLEEEDF PLRPNEEGKG VEKSNKDEGV PMPGTRVSKN
501: KKLKISQHRP SGSRVKFDEE GNPVAPLAIV AATTETEVAL DEEARKDYYK KLGEQLRKVD HEDKKVEREK RREKRMKEKI KRKQGEMEEE EEEEGHEGSA
601: SSEEETGRKR KRAKKMYFDD NGDGDEEKEG GKINTDAISI AELEEMALKL ITQS

Best Arabidopsis Sequence Match ( AT5G54910.1 )
(BLAST)

001: MVKIKKTKGM RKQIRLNEVE EINLLKQWIE SQKPDSGFNP LSLRPLPKDS KIGKSEDGKN GTVFSRYAGV RKFAQLPISD KTKRGLKDAK YVDMTDVQSA
101: AIPHALCGRD ILGAARTGSG KTLAFVIPIL EKLHRERWSP EDGVGCIIIS PTRELAAQTF GVLNKVGKFH KFSAGLLIGG REGVDVEKER VHEMNILVCA
201: PGRLLQHMDE TPNFECPQLQ ILILDEADRV LDSAFKGQLD PIISQLPKHR QTLLFSATQT KKVKDLARLS LRDPEYISVH AEAVTATPTS LMQTVMIVPV
301: EKKLDMLWSF IKTHLNSRIL VFLSTKKQVK FVHEAFNKLR PGIPLKSLHG KMSQEKRMGV YSQFIERQSV LFCTDVLARG LDFDKAVDWV VQVDCPEDVA
401: SYIHRVGRTA RFYTQGKSLL FLTPSEEKMI EKLQEAKVPI KLIKANNQKL QEVSRLLAAL LVKYPDLQGV AQRAFITYLR SIHKRRDKEI FDVSKLSIEN
501: FSASLGLPMT PRIRFTNLKT KKKGVYESSI AMEIENAQEY EAPLVVKKDL LGEDLEEEDF ALKPRKEGKV VEKSTKEEEV LIPGNRVLKN KKLKINLHRP
601: FGSRVVLDEE GNSLAPLASV AAEAGTEVAL DEERMNDYYK KVGAEMRKAD IEDKKVDKER RREKRMKQKI KRKRGAMEDE EEEEEEDHDG SGSSDDETGR
701: NSKRAKKIVS DNEENGGKIN TDSLSVADLE EMALKFITQ

Arabidopsis Description

RH32DEAD-box ATP-dependent RNA helicase 32 [Source:UniProtKB/Swiss-Prot;Acc:Q9FFT9]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.