CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
mitochondrion 1
cytosol 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra026724.1-P	Field mustard	nucleus	98.97	99.18
CDX81759	Canola	cytosol	97.54	97.34
AT1G16280.1	Thale cress	nucleus	87.89	87.17
VIT_19s0085g00510.t01	Wine grape	cytosol	68.38	68.1
PGSC0003DMT400029241	Potato	cytosol	66.94	66.94
Solyc10g005520.2.1	Tomato	cytosol	66.94	66.8
GSMUA_Achr5P09910_001	Banana	nucleus	53.39	54.85
Os07t0633500-00	Rice	nucleus	44.56	53.85
KRH43700	Soybean	cytosol	64.07	53.24
TraesCS2A01G154800.1	Wheat	cytosol	55.65	53.14
TraesCS2B01G179900.1	Wheat	cytosol	55.65	53.03
TraesCS2D01G160100.1	Wheat	cytosol	55.44	52.94
EER99761	Sorghum	cytosol	54.21	52.59
Zm00001d022246_P001	Maize	cytosol	55.85	52.31
KRH13749	Soybean	cytosol, plastid	63.04	51.95
CDY47007	Canola	cytosol	39.01	42.32
CDY42845	Canola	cytosol	39.01	42.32
HORVU2Hr1G028120.2	Barley	plastid	41.48	40.64
CDX92251	Canola	nucleus	28.75	24.6
CDY18530	Canola	nucleus	28.54	24.47
CDX82336	Canola	nucleus	28.75	24.43
CDX99342	Canola	nucleus	28.34	24.3
CDX95512	Canola	nucleus	28.13	24.04
CDY36514	Canola	nucleus	28.75	24.01
CDX75974	Canola	nucleus	28.54	23.88
CDY08740	Canola	nucleus	28.95	23.74
CDY40740	Canola	cytosol	24.23	21.81
CDX96202	Canola	cytosol	12.32	21.58
CDY14112	Canola	cytosol	25.67	21.04
CDY44780	Canola	mitochondrion	24.85	20.93
CDY04952	Canola	nucleus	25.46	20.88
CDX70149	Canola	nucleus	25.05	20.4
CDY40519	Canola	nucleus	30.8	19.79
CDX79974	Canola	nucleus	27.93	19.77
CDY23886	Canola	plasma membrane	27.72	19.26
CDY17287	Canola	nucleus	24.85	18.5
CDY50846	Canola	nucleus	31.42	18.24
CDY53643	Canola	nucleus	31.42	18.13
CDY52719	Canola	nucleus, plastid	29.98	17.61
CDY34979	Canola	nucleus, plastid	29.57	17.31
CDX84428	Canola	mitochondrion	24.85	17.11
CDY41525	Canola	mitochondrion	24.85	17.02
CDX79187	Canola	cytosol	28.75	16.51
CDX68066	Canola	cytosol	28.75	16.43
CDY32273	Canola	nucleus	29.57	15.77
CDY49890	Canola	mitochondrion	24.85	15.51
CDY45370	Canola	mitochondrion	24.85	15.47
CDX69933	Canola	cytosol	2.87	10.29
CDY21554	Canola	mitochondrion	25.05	8.98
CDX69935	Canola	mitochondrion	25.05	8.85

Protein Annotations

MapMan:17.1.3.2.1.15	Gene3D:3.40.50.300	GO:A0A078ITS1	UniProt:A0A078ITS1	EnsemblPlants:CDY52844	ProteinID:CDY52844
ProteinID:CDY52844.1	InterPro:DEAD/DEAH_box_helicase_dom	GO:GO:0000166	GO:GO:0003674	GO:GO:0003676	GO:GO:0003824
GO:GO:0004386	GO:GO:0005488	GO:GO:0005524	GO:GO:0016787	EnsemblPlantsGene:GSBRNA2T00007995001	InterPro:Helicase_ATP-bd
InterPro:Helicase_C	InterPro:IPR001650	InterPro:IPR014001	InterPro:IPR014014	InterPro:P-loop_NTPase	PFAM:PF00270
PFAM:PF00271	ScanProsite:PS00039	PFscan:PS51192	PFscan:PS51194	PFscan:PS51195	PANTHER:PTHR24031
PANTHER:PTHR24031:SF552	InterPro:RNA-helicase_DEAD-box_CS	InterPro:RNA_helicase_DEAD_Q_motif	SMART:SM00487	SMART:SM00490	SUPFAM:SSF52540
UniParc:UPI0004EEEAF9	SEG:seg	:	:	:	:

Description

BnaA09g56360DBnaA09g56360D protein [Source:UniProtKB/TrEMBL;Acc:A0A078ITS1]

Coordinates

chrLK033137:+:552..3236

Molecular Weight (calculated)

54557.3 Da

IEP (calculated)

9.008

GRAVY (calculated)

-0.277

Length

487 amino acids

Sequence
(BLAST)

001: MEEPTSSSEC GITIIAKPRK TPKTLNPQPQ PQKLDPTPQF EKFTSTDATT SASNFESLGL SEWASETCKE LGMRKPTPVQ THCIPKILSG RDVLGLAQTG
101: SGKTAAFALP ILNRLAEDPY GVFALVVTPT RELAFQLAEQ FKALGSCLNL RCCVIVGGMD MLTQTRSLIS RPHVVITTPG RIKVLLENNP DVPPVFSRTK
201: FLVLDEADRV LDVGFQDELR TIFNCLPKTR QTLLFSATMT SNLQTLLEHS SNKAYFYEAY EGLKTVDTLK QQYIFIDKDA KELYLVHILS QMEDKEIRSA
301: MIFVSTCRTC QRLSLMLEEL EVENAALHSL NSQSLRLSAL SKFKSGKVPI LLATDVASRG LDIPTVDLVI NYDIPRYPRD YVHRVGRTAR AGRGGLAVSI
401: ITETDVNLIH EIEAEVGKQM ELYNYREITD SLEVTKVSKA KRVAMMKMLD DGFEDKVKDR RKLKRKTLAD KGMLKKRSKT RKSAEEK

Best Arabidopsis Sequence Match ( AT1G16280.1 )
(BLAST)

001: MEEPTPEEEG GITIMSKSRK NPKTVVNIQS QKLDSDQNTP QFEKFTNPNP SSDTTSATNF EGLGLAEWAV ETCKELGMRK PTPVQTHCVP KILAGRDVLG
101: LAQTGSGKTA AFALPILHRL AEDPYGVFAL VVTPTRELAF QLAEQFKALG SCLNLRCSVI VGGMDMLTQT MSLVSRPHIV ITTPGRIKVL LENNPDVPPV
201: FSRTKFLVLD EADRVLDVGF QDELRTIFQC LPKSRQTLLF SATMTSNLQA LLEHSSNKAY FYEAYEGLKT VDTLTQQFIF EDKDAKELYL VHILSQMEDK
301: GIRSAMIFVS TCRTCQRLSL MLDELEVENI AMHSLNSQSM RLSALSKFKS GKVPILLATD VASRGLDIPT VDLVINYDIP RDPRDYVHRV GRTARAGRGG
401: LAVSIITETD VKLIHKIEEE VGKKMEPYNK KVITDSLEVT KVSKAKRVAM MKMLDNGFED KVKDRRKLKR KTLADKGLLK KRGKRQKSTE N

Arabidopsis Description

RH36DEAD-box ATP-dependent RNA helicase 36 [Source:UniProtKB/Swiss-Prot;Acc:Q9SA27]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.