Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- mitochondrion 1
- cytosol 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY52844 | Canola | cytosol | 97.34 | 97.54 |
| AT1G16280.1 | Thale cress | nucleus | 87.91 | 87.37 |
| VIT_19s0085g00510.t01 | Wine grape | cytosol | 68.03 | 67.89 |
| PGSC0003DMT400029241 | Potato | cytosol | 66.39 | 66.53 |
| Solyc10g005520.2.1 | Tomato | cytosol | 65.98 | 65.98 |
| GSMUA_Achr5P09910_001 | Banana | nucleus | 53.48 | 55.06 |
| KRH43700 | Soybean | cytosol | 64.55 | 53.75 |
| Os07t0633500-00 | Rice | nucleus | 44.06 | 53.35 |
| TraesCS2A01G154800.1 | Wheat | cytosol | 55.12 | 52.75 |
| TraesCS2B01G179900.1 | Wheat | cytosol | 55.12 | 52.64 |
| TraesCS2D01G160100.1 | Wheat | cytosol | 54.92 | 52.55 |
| EER99761 | Sorghum | cytosol | 53.89 | 52.39 |
| Zm00001d022246_P001 | Maize | cytosol | 55.53 | 52.12 |
| KRH13749 | Soybean | cytosol, plastid | 63.11 | 52.12 |
| CDY42845 | Canola | cytosol | 38.73 | 42.09 |
| CDY47007 | Canola | cytosol | 38.73 | 42.09 |
| HORVU2Hr1G028120.2 | Barley | plastid | 40.98 | 40.24 |
| CDX92251 | Canola | nucleus | 28.89 | 24.78 |
| CDY18530 | Canola | nucleus | 28.69 | 24.65 |
| CDX82336 | Canola | nucleus | 28.89 | 24.61 |
| CDX99342 | Canola | nucleus | 28.48 | 24.47 |
| CDX95512 | Canola | nucleus | 28.28 | 24.21 |
| CDX75974 | Canola | nucleus | 28.69 | 24.05 |
| CDY36514 | Canola | nucleus | 28.69 | 24.01 |
| CDY08740 | Canola | nucleus | 28.89 | 23.74 |
| CDY40740 | Canola | cytosol | 24.59 | 22.18 |
| CDY44780 | Canola | mitochondrion | 25.2 | 21.28 |
| CDX96202 | Canola | cytosol | 12.09 | 21.22 |
| CDY14112 | Canola | cytosol | 25.61 | 21.04 |
| CDY04952 | Canola | nucleus | 25.41 | 20.88 |
| CDX70149 | Canola | nucleus | 24.8 | 20.23 |
| CDX79974 | Canola | nucleus | 28.07 | 19.91 |
| CDY40519 | Canola | nucleus | 30.53 | 19.66 |
| CDY23886 | Canola | plasma membrane | 27.87 | 19.4 |
| CDY17287 | Canola | nucleus | 24.39 | 18.2 |
| CDY50846 | Canola | nucleus | 31.15 | 18.12 |
| CDY53643 | Canola | nucleus | 31.15 | 18.01 |
| CDY52719 | Canola | nucleus, plastid | 29.92 | 17.61 |
| CDX84428 | Canola | mitochondrion | 25.2 | 17.4 |
| CDY34979 | Canola | nucleus, plastid | 29.51 | 17.31 |
| CDY41525 | Canola | mitochondrion | 25.2 | 17.3 |
| CDX79187 | Canola | cytosol | 28.69 | 16.51 |
| CDX68066 | Canola | cytosol | 28.69 | 16.43 |
| CDY32273 | Canola | nucleus | 29.3 | 15.66 |
| CDY49890 | Canola | mitochondrion | 25.0 | 15.64 |
| CDY45370 | Canola | mitochondrion | 25.0 | 15.6 |
| CDX69933 | Canola | cytosol | 2.87 | 10.29 |
| CDY21554 | Canola | mitochondrion | 25.41 | 9.12 |
| CDX69935 | Canola | mitochondrion | 25.41 | 8.99 |
Protein Annotations
| MapMan:17.1.3.2.1.15 | Gene3D:3.40.50.300 | GO:A0A078D0J1 | EnsemblPlants:CDX81759 | ProteinID:CDX81759 | ProteinID:CDX81759.1 |
| InterPro:DEAD/DEAH_box_helicase_dom | GO:GO:0000166 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0005488 | GO:GO:0005524 |
| EnsemblPlantsGene:GSBRNA2T00136692001 | InterPro:Helicase_ATP-bd | InterPro:Helicase_C | InterPro:IPR001650 | InterPro:IPR014001 | InterPro:IPR014014 |
| InterPro:P-loop_NTPase | PFAM:PF00270 | PFAM:PF00271 | ScanProsite:PS00039 | PFscan:PS51192 | PFscan:PS51194 |
| PFscan:PS51195 | PANTHER:PTHR24031 | PANTHER:PTHR24031:SF552 | InterPro:RNA-helicase_DEAD-box_CS | InterPro:RNA_helicase_DEAD_Q_motif | SMART:SM00487 |
| SMART:SM00490 | SUPFAM:SSF52540 | UniParc:UPI0004EE6A5F | SEG:seg | : | : |
Description
BnaC08g38420D
Coordinates
chrLK031826:-:640993..643151
Molecular Weight (calculated)
54643.3 Da
IEP (calculated)
8.974
GRAVY (calculated)
-0.267
Length
488 amino acids
Sequence
(BLAST)
(BLAST)
001: MEEPTSSSEE CGITIIAKPR KKTPKTIPQT QPPKLDLTPQ FEKFTSTDST TSAANFESLG LSEWASETCK ELGMRKPTPV QTHCIPKILA GRDVLGLAQT
101: GSGKTAAFAL PILNRLAEDP YGVFALVVTP TRELAFQLAE QFKALGSCLN LRCSVVVGGM DMLTQTRSLI SRPHIVITTP GRIKVLLENN PDVPPVFSRT
201: KFLVLDEADR VLDVGFQDEL RTIFNCLPKT RQTLLFSATM TSNLQTLLEH SSNKAYFYEA YEGLKTVDTL KQQYIFIDKD AKELYLVHIL SQMEDKEIRS
301: AMIFVSTCRT CQRLSLMLEE LEVENAALHS LNSQSLRLSA LSKFKSGKVP ILLATDVASR GLDIPTVDLV INYDIPRYPR DYVHRVGRTA RAGRGGLAVS
401: IITETDVNLI HEIEAEVGKQ MELYNYREIT DSLEVTKVSK AKRVAMMKML DDGFEDKVKD RRKLKRKTLA DKGMLKKRSK TRKSAEEN
101: GSGKTAAFAL PILNRLAEDP YGVFALVVTP TRELAFQLAE QFKALGSCLN LRCSVVVGGM DMLTQTRSLI SRPHIVITTP GRIKVLLENN PDVPPVFSRT
201: KFLVLDEADR VLDVGFQDEL RTIFNCLPKT RQTLLFSATM TSNLQTLLEH SSNKAYFYEA YEGLKTVDTL KQQYIFIDKD AKELYLVHIL SQMEDKEIRS
301: AMIFVSTCRT CQRLSLMLEE LEVENAALHS LNSQSLRLSA LSKFKSGKVP ILLATDVASR GLDIPTVDLV INYDIPRYPR DYVHRVGRTA RAGRGGLAVS
401: IITETDVNLI HEIEAEVGKQ MELYNYREIT DSLEVTKVSK AKRVAMMKML DDGFEDKVKD RRKLKRKTLA DKGMLKKRSK TRKSAEEN
001: MEEPTPEEEG GITIMSKSRK NPKTVVNIQS QKLDSDQNTP QFEKFTNPNP SSDTTSATNF EGLGLAEWAV ETCKELGMRK PTPVQTHCVP KILAGRDVLG
101: LAQTGSGKTA AFALPILHRL AEDPYGVFAL VVTPTRELAF QLAEQFKALG SCLNLRCSVI VGGMDMLTQT MSLVSRPHIV ITTPGRIKVL LENNPDVPPV
201: FSRTKFLVLD EADRVLDVGF QDELRTIFQC LPKSRQTLLF SATMTSNLQA LLEHSSNKAY FYEAYEGLKT VDTLTQQFIF EDKDAKELYL VHILSQMEDK
301: GIRSAMIFVS TCRTCQRLSL MLDELEVENI AMHSLNSQSM RLSALSKFKS GKVPILLATD VASRGLDIPT VDLVINYDIP RDPRDYVHRV GRTARAGRGG
401: LAVSIITETD VKLIHKIEEE VGKKMEPYNK KVITDSLEVT KVSKAKRVAM MKMLDNGFED KVKDRRKLKR KTLADKGLLK KRGKRQKSTE N
101: LAQTGSGKTA AFALPILHRL AEDPYGVFAL VVTPTRELAF QLAEQFKALG SCLNLRCSVI VGGMDMLTQT MSLVSRPHIV ITTPGRIKVL LENNPDVPPV
201: FSRTKFLVLD EADRVLDVGF QDELRTIFQC LPKSRQTLLF SATMTSNLQA LLEHSSNKAY FYEAYEGLKT VDTLTQQFIF EDKDAKELYL VHILSQMEDK
301: GIRSAMIFVS TCRTCQRLSL MLDELEVENI AMHSLNSQSM RLSALSKFKS GKVPILLATD VASRGLDIPT VDLVINYDIP RDPRDYVHRV GRTARAGRGG
401: LAVSIITETD VKLIHKIEEE VGKKMEPYNK KVITDSLEVT KVSKAKRVAM MKMLDNGFED KVKDRRKLKR KTLADKGLLK KRGKRQKSTE N
Arabidopsis Description
RH36DEAD-box ATP-dependent RNA helicase 36 [Source:UniProtKB/Swiss-Prot;Acc:Q9SA27]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.