CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus, cytosol

Predictor Summary:

nucleus 2
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH73730	Soybean	nucleus	96.97	68.63
Os07t0517000-01	Rice	nucleus	49.43	49.81
PGSC0003DMT400057202	Potato	nucleus	64.2	44.9
Solyc07g064520.2.1	Tomato	nucleus	63.64	44.56
CDY17287	Canola	nucleus	55.11	44.5
GSMUA_Achr6P00390_001	Banana	cytosol, mitochondrion	57.58	41.42
AT5G54910.1	Thale cress	nucleus	55.68	39.78
Bra002946.1-P	Field mustard	nucleus	55.11	39.11
EER99450	Sorghum	nucleus	51.7	36.64
TraesCS2A01G222000.1	Wheat	mitochondrion, nucleus	51.14	35.57
Zm00001d006497_P002	Maize	nucleus	50.19	35.43
TraesCS2B01G247500.1	Wheat	nucleus	51.14	35.39
TraesCS2D01G228000.1	Wheat	nucleus	51.14	35.34
KRH48210	Soybean	nucleus	16.48	27.19
KRH62970	Soybean	nucleus	24.43	23.8
KRH54795	Soybean	nucleus	24.43	23.58
KRH56711	Soybean	nucleus	24.81	22.9
KRH03838	Soybean	nucleus	24.81	22.78
KRH65120	Soybean	cytosol	17.05	20.5
KRG97683	Soybean	nucleus	20.45	18.34
KRH12590	Soybean	nucleus	18.75	18.23
KRH37539	Soybean	nucleus	17.8	17.44
KRH54980	Soybean	nucleus	5.68	16.85
KRH31184	Soybean	nucleus	21.02	16.69
KRH37947	Soybean	plastid	15.72	14.09
KRH13749	Soybean	cytosol, plastid	15.34	13.71
KRH43700	Soybean	cytosol	15.15	13.65
KRH09570	Soybean	nucleus	19.51	13.26
KRH47920	Soybean	nucleus	17.61	13.23
KRH64859	Soybean	nucleus	19.13	13.0
KRH41139	Soybean	nucleus	16.48	12.31
KRG98832	Soybean	nucleus	17.23	11.99
KRH46113	Soybean	nucleus	17.05	11.89
KRH06491	Soybean	nucleus	17.61	11.54
KRH48208	Soybean	nucleus	17.23	11.23
KRH65117	Soybean	plastid	15.53	9.95
KRH37970	Soybean	cytosol	5.68	9.38
KRH59841	Soybean	nucleus	6.63	6.62

Protein Annotations

Gene3D:3.40.50.300	MapMan:35.1	UniProt:A0A0R0G8C2	EMBL:ACUP02008502	ncoils:Coil	InterPro:DEAD/DEAH_box_helicase_dom
InterPro:DUF4217	EnsemblPlantsGene:GLYMA_14G0243001	GO:GO:0000166	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723
GO:GO:0003824	GO:GO:0004386	GO:GO:0005488	GO:GO:0005524	GO:GO:0016787	InterPro:Helicase_ATP-bd
InterPro:Helicase_C	InterPro:IPR001650	InterPro:IPR014001	EnsemblPlants:KRH14417	ProteinID:KRH14417	ProteinID:KRH14417.1
InterPro:P-loop_NTPase	PFAM:PF00270	PFAM:PF00271	PFAM:PF13959	ScanProsite:PS00039	PFscan:PS51192
PFscan:PS51194	PANTHER:PTHR24031	PANTHER:PTHR24031:SF54	InterPro:RNA-helicase_DEAD-box_CS	SMART:SM00490	SMART:SM01178
SUPFAM:SSF52540	UniParc:UPI0006ED9BA6	SEG:seg	:	:	:

Description

hypothetical protein

Coordinates

chr14:+:1742674..1745905

Molecular Weight (calculated)

60407.8 Da

IEP (calculated)

8.536

GRAVY (calculated)

-0.509

Length

528 amino acids

Sequence
(BLAST)

001: VLVLDEADRI LDSGFKKELN AIISQLPKRR QTLLFSATQT KSIQDLARLS LKDPEYLSVH EESVTSTPTL LKQIVMIVPL EQKLDMLWSF IKTHLQSKTL
101: VFLSSCKQVK FVFEAFKKLH PGIPLKCLHG RMKQERRMAI YSEFCEKRSV LFSTDVAARG LDFNKAVDWV VQVDCPENVA SYIHRVGRTA RYKSDGKSVL
201: FLLPSEIQML EKLKAAKVPV HFNKPRQELL QPVSSLLASL LAKYPDMQHR AQRAFITYLR SIHIQKDKDI FDVMKLPINE YSASLGLPMT PKIRFLNPKI
301: NSKDVSKSIL VEPEDSDKET IFEVSRKLDT AAFKDEETEN DILQLADTAN EGEVKSSEIE EIIPATRVLK KKKLKINVHR PLGTRVVFDD EGHTLPPLAR
401: IADTQSGKEM LLDPEKKAEY YRRMRDDLKK ADNEDKLIER QRLREKRIKQ KMKWKAGNAE EDDQDDISGS EVDETVDRWH KKSKVYFDSD SDEGERNDVT
501: GNAGITTGAV TLEEQEALAL KLLNSMHS

Best Arabidopsis Sequence Match ( AT5G54910.1 )
(BLAST)

001: MVKIKKTKGM RKQIRLNEVE EINLLKQWIE SQKPDSGFNP LSLRPLPKDS KIGKSEDGKN GTVFSRYAGV RKFAQLPISD KTKRGLKDAK YVDMTDVQSA
101: AIPHALCGRD ILGAARTGSG KTLAFVIPIL EKLHRERWSP EDGVGCIIIS PTRELAAQTF GVLNKVGKFH KFSAGLLIGG REGVDVEKER VHEMNILVCA
201: PGRLLQHMDE TPNFECPQLQ ILILDEADRV LDSAFKGQLD PIISQLPKHR QTLLFSATQT KKVKDLARLS LRDPEYISVH AEAVTATPTS LMQTVMIVPV
301: EKKLDMLWSF IKTHLNSRIL VFLSTKKQVK FVHEAFNKLR PGIPLKSLHG KMSQEKRMGV YSQFIERQSV LFCTDVLARG LDFDKAVDWV VQVDCPEDVA
401: SYIHRVGRTA RFYTQGKSLL FLTPSEEKMI EKLQEAKVPI KLIKANNQKL QEVSRLLAAL LVKYPDLQGV AQRAFITYLR SIHKRRDKEI FDVSKLSIEN
501: FSASLGLPMT PRIRFTNLKT KKKGVYESSI AMEIENAQEY EAPLVVKKDL LGEDLEEEDF ALKPRKEGKV VEKSTKEEEV LIPGNRVLKN KKLKINLHRP
601: FGSRVVLDEE GNSLAPLASV AAEAGTEVAL DEERMNDYYK KVGAEMRKAD IEDKKVDKER RREKRMKQKI KRKRGAMEDE EEEEEEDHDG SGSSDDETGR
701: NSKRAKKIVS DNEENGGKIN TDSLSVADLE EMALKFITQ

Arabidopsis Description

RH32DEAD-box ATP-dependent RNA helicase 32 [Source:UniProtKB/Swiss-Prot;Acc:Q9FFT9]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.