CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus, plastid
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
TargetP:	plastid
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH37539	Soybean	nucleus	86.0	86.64
VIT_11s0016g00630.t01	Wine grape	nucleus	75.87	68.67
PGSC0003DMT400006153	Potato	nucleus	65.93	67.04
PGSC0003DMT400006154	Potato	nucleus	73.11	66.5
Solyc07g042270.2.1	Tomato	nucleus	72.93	66.33
Bra004584.1-P	Field mustard	nucleus	69.24	61.24
AT2G40700.1	Thale cress	nucleus	68.51	60.98
GSMUA_Achr7P18160_001	Banana	nucleus	64.46	59.93
Os05t0110500-02	Rice	nucleus	64.64	59.39
EES18259	Sorghum	nucleus	65.56	59.33
TraesCS1B01G037600.1	Wheat	nucleus	65.38	57.63
Zm00001d010225_P001	Maize	plasma membrane	54.51	57.59
TraesCS1D01G031400.1	Wheat	nucleus	64.83	57.52
TraesCS1A01G030500.1	Wheat	nucleus	64.64	57.35
CDX79974	Canola	nucleus	69.43	54.8
CDY23886	Canola	plasma membrane	69.24	53.64
HORVU1Hr1G004510.5	Barley	plastid	64.83	53.33
KRH65120	Soybean	cytosol	25.78	31.89
KRH62970	Soybean	nucleus	31.31	31.37
KRH54795	Soybean	nucleus	31.12	30.9
KRH56711	Soybean	nucleus	31.49	29.9
KRH48210	Soybean	nucleus	17.5	29.69
KRH03838	Soybean	nucleus	31.31	29.57
KRH37970	Soybean	cytosol	14.73	25.0
KRG97683	Soybean	nucleus	27.07	24.96
KRH43700	Soybean	cytosol	24.13	22.35
KRH13749	Soybean	cytosol, plastid	24.31	22.34
KRH31184	Soybean	nucleus	27.26	22.26
KRH37947	Soybean	plastid	22.84	21.05
KRH73730	Soybean	nucleus	27.44	19.97
KRH46113	Soybean	nucleus	26.15	18.76
KRH14417	Soybean	cytosol, nucleus	18.23	18.75
KRH47920	Soybean	nucleus	24.13	18.63
KRG98832	Soybean	nucleus	25.78	18.45
KRH54980	Soybean	nucleus	5.89	17.98
KRH41139	Soybean	nucleus	23.39	17.96
KRH09570	Soybean	nucleus	24.13	16.86
KRH64859	Soybean	nucleus	23.94	16.73
KRH06491	Soybean	nucleus	24.13	16.25
KRH48208	Soybean	nucleus	22.47	15.06
KRH59841	Soybean	nucleus	14.55	14.93
KRH65117	Soybean	plastid	21.55	14.2

Protein Annotations

Gene3D:3.40.50.300	MapMan:35.1	EMBL:ACUP02009347	InterPro:DEAD/DEAH_box_helicase_dom	InterPro:DUF4217	EnsemblPlantsGene:GLYMA_15G181200
GO:GO:0000166	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0003824	GO:GO:0004004
GO:GO:0004386	GO:GO:0005488	GO:GO:0005524	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0005730	GO:GO:0005737	GO:GO:0006139	GO:GO:0008150	GO:GO:0008152
GO:GO:0009987	GO:GO:0010501	GO:GO:0016787	InterPro:Helicase_ATP-bd	InterPro:Helicase_C	UniProt:I1MHI7
InterPro:IPR001650	InterPro:IPR014001	InterPro:IPR014014	EnsemblPlants:KRH12590	ProteinID:KRH12590	ProteinID:KRH12590.1
InterPro:P-loop_NTPase	PFAM:PF00270	PFAM:PF00271	PFAM:PF13959	ScanProsite:PS00039	PFscan:PS51192
PFscan:PS51194	PFscan:PS51195	PANTHER:PTHR24031	PANTHER:PTHR24031:SF54	InterPro:RNA-helicase_DEAD-box_CS	InterPro:RNA_helicase_DEAD_Q_motif
SMART:SM00487	SMART:SM00490	SMART:SM01178	SUPFAM:SSF52540	UniParc:UPI0002955226	SEG:seg

Description

hypothetical protein

Coordinates

chr15:-:17549761..17554814

Molecular Weight (calculated)

61946.4 Da

IEP (calculated)

9.553

GRAVY (calculated)

-0.202

Length

543 amino acids

Sequence
(BLAST)

001: DVFASCSFSS LGLESNLCEQ LRERLGFEVP TLVQAQAIPV ILSGRHALVN AATGTGKTVA YLAPIIHHLQ GYENRIQRSD GTFALVLVPT RELCLQVYEI
101: LQKLLHWFHW IVPGYIMGGE NRSKEKARLR KGISILIATP GSLLDHLKNT TSFLYSNLRW IIFDEADRIL KLGFGKNIEE ILDLLVPTHS KMQRQNLLLS
201: TTLNERVNHL AKMSLDNPVM IGLDESDEDS EDKYYSKVPT VGDYKVPLQL IQRYMKVPCG SRLPVLLSIL KHLFEREPSQ KVVLFFSTCD AVDFHYSLLS
301: EFQFSSYSQT EGVQQVFLGC KTFRLHGNMQ QEDRRTSFQA FKTEKSALLL STDVSARGLD FPKVRFIIQY DSPGEATEYV HRVGRTARLG ERGESLVFLQ
401: PVEIDYLQDL EKHGVSLTEY PVLKVLDNFP LQKNHTKKSV FLESHPWVLC LQKALEAFIM SKPEMDELSR KAFCSWVRAY TAHRGELKRV FMIKKLHLGH
501: VAKSFALKQP PSLVGQSFQK QIEKRKIFEK KNGLSKKRKV AGL

Best Arabidopsis Sequence Match ( AT2G40700.1 )
(BLAST)

001: MMKRAQQSAR ETKQEAKDAS KAKSGLFASC SFSSLGLDTK LSDQLKERMG FEAPTLVQAQ AIPVILSGRD VLVNAPTGTG KTIAYLAPLI HHLQGHSPKV
101: DRSHGTFALV IVPTRELCLQ VYETLEKLLH RFHWIVPGYV MGGEKKAKEK ARLRKGISIL IATPGRLLDH LKNTASFVHK NLRWVIFDEA DSILELGYGK
201: EIEQIIKLLG SGQNEQGEED DIVPKGIQKQ NLLLSATLND KVNDLAKLSL DDPVMIGLDN TKLQQNLSIE SPAAPDSDAE DMVIHVNKSA NPLSEDYGIP
301: SQLVQRYLRV PCGARLVALL SVLKNLFERE ASQKVVVFFS TRDAVDFHYS LLSEFQWPPN SETEEEGTKE LFLKCKTFRL HGSMEQEDRR SAFGTFKTEK
401: QAVLLSTDVA ARGLDFPKVR CIIQYDCPGE ATEYVHRVGR TARIGEKGEA LLFLQPIEID YLKELKKHGA SLTEYPLMKV LDKFPIPGNM PRIKKVLSLE
501: SHPWVISLQR ALESLTYAEP KMKSLAKNAF VSWVRGYAAH KGELKSIFVV KKLHLGHVAK SFALREQPSL VGKSHHKETM KRKRDERQKG QQGKKRKKMS
601: GTGNRSTQKT

Arabidopsis Description

P-loop containing nucleoside triphosphate hydrolases superfamily protein [Source:TAIR;Acc:AT2G40700]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.