CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 4
mitochondrion 1
nucleus 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	cytosol, mitochondrion, nucleus, plastid
BaCelLo:	plastid
ChloroP:	plastid
iPSORT:	mitochondrion
MultiLoc:	nucleus
PProwler:	plastid
TargetP:	plastid
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH46113	Soybean	nucleus	91.51	71.2
KRG98832	Soybean	nucleus	89.64	69.57
VIT_18s0001g14540.t01	Wine grape	nucleus	75.55	60.79
Solyc04g081580.2.1	Tomato	nucleus	75.55	59.81
PGSC0003DMT400025551	Potato	nucleus	75.21	59.46
GSMUA_Achr8P12970_001	Banana	nucleus	72.5	55.74
KRH37970	Soybean	cytosol	29.37	54.06
CDY40519	Canola	nucleus	67.91	52.77
Zm00001d021127_P001	Maize	nucleus, plasma membrane	68.76	52.6
TraesCS5D01G385400.1	Wheat	nucleus	68.08	51.54
TraesCS5B01G378100.1	Wheat	nucleus	68.08	51.48
TraesCS5A01G375900.1	Wheat	nucleus	67.57	51.16
Os12t0481100-01	Rice	nucleus	69.61	51.12
KXG35997	Sorghum	nucleus	68.76	51.01
AT4G16630.1	Thale cress	nucleus	67.91	50.7
Zm00001d006113_P001	Maize	nucleus	67.91	50.7
CDY50846	Canola	nucleus	69.95	49.11
CDY53643	Canola	nucleus	69.78	48.7
HORVU5Hr1G093160.3	Barley	nucleus	67.74	48.01
Bra040743.1-P	Field mustard	nucleus	70.12	47.25
Bra038492.1-P	Field mustard	nucleus	64.35	41.74
CDY32273	Canola	nucleus	64.52	41.62
KRH65120	Soybean	cytosol	21.73	29.16
KRH48210	Soybean	nucleus	15.28	28.12
KRG97683	Soybean	nucleus	22.92	22.92
KRH12590	Soybean	nucleus	21.05	22.84
KRH54980	Soybean	nucleus	6.62	21.91
KRH43700	Soybean	cytosol	21.73	21.84
KRH13749	Soybean	cytosol, plastid	21.73	21.66
KRH37539	Soybean	nucleus	19.52	21.34
KRH56711	Soybean	nucleus	20.2	20.8
KRH31184	Soybean	nucleus	23.09	20.45
KRH62970	Soybean	nucleus	18.68	20.3
KRH54795	Soybean	nucleus	18.85	20.29
KRH03838	Soybean	nucleus	19.69	20.17
KRH09570	Soybean	nucleus	25.13	19.05
KRH64859	Soybean	nucleus	24.96	18.92
KRH41139	Soybean	nucleus	19.86	16.55
KRH47920	Soybean	nucleus	19.19	16.07
KRH14417	Soybean	cytosol, nucleus	14.09	15.72
KRH73730	Soybean	nucleus	19.86	15.68
KRH48208	Soybean	nucleus	21.22	15.43
KRH65117	Soybean	plastid	20.54	14.68
KRH06491	Soybean	nucleus	19.19	14.02
KRH59841	Soybean	nucleus	12.22	13.61

Protein Annotations

Gene3D:3.40.50.300	MapMan:35.1	UniProt:A0A0R0IDN7	EMBL:ACUP02005568	ncoils:Coil	InterPro:DEAD/DEAH_box_helicase_dom
EnsemblPlantsGene:GLYMA_09G100300	GO:GO:0000166	GO:GO:0003674	GO:GO:0003676	GO:GO:0003824	GO:GO:0004004
GO:GO:0005488	GO:GO:0005524	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0005730	GO:GO:0005737	GO:GO:0006139	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987
GO:GO:0010501	GO:GO:0016787	InterPro:Helicase_ATP-bd	InterPro:Helicase_C	InterPro:IPR001650	InterPro:IPR014001
EnsemblPlants:KRH37947	ProteinID:KRH37947	ProteinID:KRH37947.1	InterPro:P-loop_NTPase	PFAM:PF00270	PFAM:PF00271
PFscan:PS51192	PFscan:PS51194	PANTHER:PTHR24031	PANTHER:PTHR24031:SF541	SMART:SM00487	SMART:SM00490
SUPFAM:SSF52540	UniParc:UPI0006EDE25D	SEG:seg	:	:	:

Description

hypothetical protein

Coordinates

chr9:-:18199051..18208305

Molecular Weight (calculated)

66680.6 Da

IEP (calculated)

10.711

GRAVY (calculated)

-0.508

Length

589 amino acids

Sequence
(BLAST)

001: AACIPLALSG RDICGSAITG SRKTAAFALP TLERLLFRPK RMRAIRVLIL TPTRESWQSI HSMIEKLAQF TDIRCCLVVG GLSTKVQEAA LRTMPDIVVA
101: TPGRMNMIDH LRNAMSVDLD DLAVLIHDEA DRLLELGFSA EIQELNMLFS STMTEEVDEL IKLSLPKPLR LSADPSTKRP ATLTEEVVRI RRMSEVNQEA
201: VLLSMCSKTF TSKVIIFSGT KQPANRLKII FGLAGLKASE LHGNLTQAQQ RLEALEQFRK QQVDFLVATN VTARGLDIIG VQIVINLACP RDLTSYVHRV
301: GRTARAGREG YAVTFVTDND RSLLKAIAKR AGSKLKSRIV AEQSIHKWSH IIEQMEDQIS EVLHEEREER VLRKAEMEAT KGIAENMIAH REEIFSRPKR
401: TWFVTEKEKK LAAKASKVKC LPVLIRNEMI VNRHPWIRVA SSGKEVISAE QAEDLRMKEK RKREREKHLP RKKRRKLEAA REMEEEEDDK QVETKGGNKK
501: EKGGMSLVDL AYRRAKAVKA VKKALDSGKI VEKNKMKSNN NSRKTPSRTE EMRELFQTDM KDKKSKRRGV GGGKKSKSSL KSKSRYKRK

Best Arabidopsis Sequence Match ( AT4G16630.1 )
(BLAST)

001: MPSSFFFEDA SDDELELIRN QEDSSEEDVK EGEAEEHEAG EDEDGEEEYE EEDDDEEEED EKRKRDADAQ SPWDFASYSS SVGEEHARRH TTSIDEKISK
101: AIQHRPVPIS INEEEEEEEE EEDASDAETD KQEEYLSEDD EAAEYKPEDA TPKPFFSTVD GVSFHADTFM ELNLSRPLLR ACETLGYKKP TPIQAACIPL
201: ALTGRDLCAS AITGSGKTAA FALPTLERLL FRPKRVFATR VLILTPTREL AVQIHSMIQN LAQFTDIKCG LIVGGLSVRE QEVVLRSMPD IVVATPGRMI
301: DHLRNSMSVD LDDLAVLILD EADRLLQTGF ATEITELVRL CPKRRQTMLF SATMTEEVKE LVKLSLNKPL RLSADPSARR PPGLTEEVVR IRRTREANQE
401: AVLLSLCTRT FKSKVIIFSG TKQAAHRLKI LFGLAGLKAA ELHGNLTQAQ RLDSLELFRK QEVDFLIATD VAARGLDIIG VQTVINYACP REIDSYVHRV
501: GRTARAGREG YAVTFVTDSD RSLLKVIAKK VGSKLKSRVI PEQSIVKWSQ IIDEMEDQYS AVISAERDER ALRKAEMEFA KAENMLEHRD EIYARPKRTW
601: FMTEKEKKLV AQAEKDSAGN PAGGELVSAD RAEDLKMKEK RKREREKNLP RKKRRKLEAA REMLEDNEGE EEEEDEEGDE KRGRSRGKDK KKQETDKKGL
701: TLKDLGYMRA KAVKAKQRAI DSGKMERPKP DKKQSRSKPR NQPRGEEMKD LFKSDMGEKK QGRGGAAAAA KPRTKSKNSF KSKARYKRR

Arabidopsis Description

RH28DEAD-box ATP-dependent RNA helicase 28 [Source:UniProtKB/Swiss-Prot;Acc:Q9ZRZ8]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.