Factsheet for VIT_18s0001g14540.t01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH46113	Soybean	nucleus	78.96	76.35
KRG98832	Soybean	nucleus	78.42	75.63
KRH37947	Soybean	plastid	60.79	75.55
KRH37970	Soybean	cytosol	32.92	75.31
Solyc04g081580.2.1	Tomato	nucleus	76.37	75.13
PGSC0003DMT400025551	Potato	nucleus	75.96	74.63
GSMUA_Achr8P12970_001	Banana	nucleus	70.36	67.23
AT4G16630.1	Thale cress	nucleus	69.26	64.26
Zm00001d021127_P001	Maize	nucleus, plasma membrane	67.35	64.03
TraesCS5D01G385400.1	Wheat	nucleus	67.9	63.88
CDY40519	Canola	nucleus	66.12	63.85
TraesCS5B01G378100.1	Wheat	nucleus	67.9	63.8
TraesCS5A01G375900.1	Wheat	nucleus	67.62	63.62
Os12t0481100-01	Rice	nucleus	69.67	63.59
KXG35997	Sorghum	nucleus	68.17	62.85
Zm00001d006113_P001	Maize	nucleus	67.21	62.36
CDY50846	Canola	nucleus	70.36	61.38
CDY53643	Canola	nucleus	70.22	60.9
HORVU5Hr1G093160.3	Barley	nucleus	68.03	59.93
Bra040743.1-P	Field mustard	nucleus	70.36	58.92
Bra038492.1-P	Field mustard	nucleus	63.8	51.43
CDY32273	Canola	nucleus	64.07	51.37
VIT_19s0085g00510.t01	Wine grape	cytosol	21.99	32.92
VIT_01s0010g01890.t01	Wine grape	nucleus	18.44	32.85
VIT_11s0065g01090.t01	Wine grape	cytosol	20.22	27.46
VIT_17s0000g04310.t01	Wine grape	cytosol	19.4	25.82
VIT_13s0067g01900.t01	Wine grape	nucleus	20.49	25.21
VIT_11s0016g00630.t01	Wine grape	nucleus	20.22	24.67
VIT_06s0004g07260.t01	Wine grape	extracellular, vacuole	4.92	22.5
VIT_05s0049g02360.t01	Wine grape	nucleus	22.13	20.56
VIT_02s0025g03950.t01	Wine grape	mitochondrion	20.08	19.5
VIT_15s0046g01010.t01	Wine grape	plastid	20.08	19.12

Protein Annotations

EntrezGene:100255871	wikigene:100255871	Gene3D:3.40.50.300	MapMan:35.1	ProteinID:CCB46047	ProteinID:CCB46047.1
ncoils:Coil	InterPro:DEAD/DEAH_box_helicase_dom	UniProt:F6H1L9	EMBL:FN595227	GO:GO:0000166	GO:GO:0003674
GO:GO:0003676	GO:GO:0003824	GO:GO:0004004	GO:GO:0004386	GO:GO:0005488	GO:GO:0005524
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005730	GO:GO:0005737
GO:GO:0006139	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0010501	GO:GO:0016787
InterPro:Helicase_ATP-bd	InterPro:Helicase_C	InterPro:IPR001650	InterPro:IPR014001	InterPro:IPR014014	EntrezGene:LOC100255871
wikigene:LOC100255871	InterPro:P-loop_NTPase	PFAM:PF00270	PFAM:PF00271	ScanProsite:PS00039	PFscan:PS51192
PFscan:PS51194	PFscan:PS51195	PANTHER:PTHR24031	PANTHER:PTHR24031:SF541	InterPro:RNA-helicase_DEAD-box_CS	InterPro:RNA_helicase_DEAD_Q_motif
SMART:SM00487	SMART:SM00490	SUPFAM:SSF52540	UniParc:UPI0001985126	ArrayExpress:VIT_18s0001g14540	EnsemblPlantsGene:VIT_18s0001g14540
EnsemblPlants:VIT_18s0001g14540.t01	unigene:Vvi.15818	RefSeq:XP_002273443	RefSeq:XP_002273443.1	SEG:seg	:

Description

No Description!

Coordinates

chr18:+:12545280..12566106

Molecular Weight (calculated)

82291.5 Da

IEP (calculated)

9.698

GRAVY (calculated)

-0.630

Length

732 amino acids

Sequence
(BLAST)

001: MDSSFVFEVP SDEEPEYEPD EDEEEEEGEG EGAAQTASQS PWDFASYSET VAEEHARRST TSVDFKISKA LEQRRLPIPN QDDSSESESD HQEDYTPEDA
101: DEAASVGGDR KSFFAPADGA SFHANSFLEL NLSRPLLRAC EALGYTKPTP IQAACIPIAL TGRDICGSAI TGSGKTAAFS LPTLERLLFR PKRVQAIRVL
201: VLTPTRELAV QVHSMMEKLA QFTDIRCCLI VGGLSSKMQE TALRSMPDVV VATPGRMIDH LRNSMSVDLE DLAVLILDEA DRLLELGFNA EIRELVRLCP
301: KRRQTMLFSA TMTEEVDELV KLSMTKPMRL AADPSTKRPA TLTEEVVRIR RMREVNQEAV LLALCSKTFT AKAIIFSGTK QAAHRLKILF GLAGFKAAEL
401: HGNLTQVQRL DALELFRKQQ VDFLIATDVA ARGLDIIGVQ TVINYACPRD LTSYVHRVGR TARAGREGYA VTFVTDNDRS LLKSIVKRAG SKLRSRIVAE
501: QSIIKWSHMI EQMEDQVAAI LQEEREERIL RKAEMEATKA ENMIAHKDDI YSRPKRTWFA TEKEKKSVAK AAKDSLEKEN GSGNNVISAQ QAEDLKMKEK
601: RKREREKNLP RKKRRKLEAA RERLEDENQI HKLKEGGREN KKEKAGISLV GIGYRRAKAV KAVKKAQDAG KIGRKANKKS ERPSQTNQSR TEEMQELFQS
701: DMSERKQKRS IRGAGKKKSK NSFKSKSRYK RK

Best Arabidopsis Sequence Match ( AT4G16630.1 )
(BLAST)

001: MPSSFFFEDA SDDELELIRN QEDSSEEDVK EGEAEEHEAG EDEDGEEEYE EEDDDEEEED EKRKRDADAQ SPWDFASYSS SVGEEHARRH TTSIDEKISK
101: AIQHRPVPIS INEEEEEEEE EEDASDAETD KQEEYLSEDD EAAEYKPEDA TPKPFFSTVD GVSFHADTFM ELNLSRPLLR ACETLGYKKP TPIQAACIPL
201: ALTGRDLCAS AITGSGKTAA FALPTLERLL FRPKRVFATR VLILTPTREL AVQIHSMIQN LAQFTDIKCG LIVGGLSVRE QEVVLRSMPD IVVATPGRMI
301: DHLRNSMSVD LDDLAVLILD EADRLLQTGF ATEITELVRL CPKRRQTMLF SATMTEEVKE LVKLSLNKPL RLSADPSARR PPGLTEEVVR IRRTREANQE
401: AVLLSLCTRT FKSKVIIFSG TKQAAHRLKI LFGLAGLKAA ELHGNLTQAQ RLDSLELFRK QEVDFLIATD VAARGLDIIG VQTVINYACP REIDSYVHRV
501: GRTARAGREG YAVTFVTDSD RSLLKVIAKK VGSKLKSRVI PEQSIVKWSQ IIDEMEDQYS AVISAERDER ALRKAEMEFA KAENMLEHRD EIYARPKRTW
601: FMTEKEKKLV AQAEKDSAGN PAGGELVSAD RAEDLKMKEK RKREREKNLP RKKRRKLEAA REMLEDNEGE EEEEDEEGDE KRGRSRGKDK KKQETDKKGL
701: TLKDLGYMRA KAVKAKQRAI DSGKMERPKP DKKQSRSKPR NQPRGEEMKD LFKSDMGEKK QGRGGAAAAA KPRTKSKNSF KSKARYKRR

Arabidopsis Description

RH28DEAD-box ATP-dependent RNA helicase 28 [Source:UniProtKB/Swiss-Prot;Acc:Q9ZRZ8]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.