Factsheet for VIT_01s0010g01890.t01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc10g007550.2.1	Tomato	cytosol, nucleus	84.43	79.04
KRH65120	Soybean	cytosol	80.78	75.63
VIT_11s0065g01090.t01	Wine grape	cytosol	98.3	74.95
KRH48210	Soybean	nucleus	56.69	72.81
CDY42845	Canola	cytosol	77.62	71.05
CDY47007	Canola	cytosol	77.37	70.82
Bra029342.1-P	Field mustard	cytosol	77.62	70.58
AT5G60990.1	Thale cress	nucleus	77.62	69.96
Zm00001d048477_P001	Maize	plastid	27.49	60.43
OQU93356	Sorghum	cytosol	66.42	60.13
TraesCS6A01G114900.1	Wheat	nucleus	66.18	59.52
TraesCS2A01G128700.1	Wheat	nucleus	64.72	58.08
Zm00001d014787_P001	Maize	nucleus	65.69	58.06
TraesCS6D01G103400.1	Wheat	nucleus	62.53	57.88
TraesCS2D01G131200.1	Wheat	nucleus	64.48	57.86
Os03t0669000-01	Rice	cytosol, nucleus, plastid	65.45	56.99
KXG22990	Sorghum	cytosol	61.07	56.4
TraesCS6B01G142500.1	Wheat	mitochondrion, nucleus	65.45	56.04
Os07t0660000-00	Rice	cytosol	57.66	53.26
TraesCS2B01G150800.1	Wheat	mitochondrion	64.72	51.55
HORVU2Hr1G022490.2	Barley	nucleus	61.07	50.91
HORVU6Hr1G020570.1	Barley	plastid	64.96	47.17
GSMUA_Achr8P34380_001	Banana	cytosol	76.16	43.05
VIT_19s0085g00510.t01	Wine grape	cytosol	45.5	38.24
VIT_06s0004g07260.t01	Wine grape	extracellular, vacuole	9.49	24.38
VIT_17s0000g04310.t01	Wine grape	cytosol	32.36	24.18
VIT_13s0067g01900.t01	Wine grape	nucleus	30.9	21.34
VIT_11s0016g00630.t01	Wine grape	nucleus	30.9	21.17
VIT_18s0001g14540.t01	Wine grape	nucleus	32.85	18.44
VIT_05s0049g02360.t01	Wine grape	nucleus	33.33	17.39
VIT_15s0046g01010.t01	Wine grape	plastid	28.22	15.08
VIT_02s0025g03950.t01	Wine grape	mitochondrion	26.76	14.59

Protein Annotations

Gene3D:3.40.50.300	MapMan:35.1	ProteinID:CCB51213	ProteinID:CCB51213.1	InterPro:DEAD/DEAH_box_helicase_dom	UniProt:F6HG20
EMBL:FN595754	GO:GO:0000166	GO:GO:0003674	GO:GO:0003676	GO:GO:0003824	GO:GO:0004004
GO:GO:0004386	GO:GO:0005488	GO:GO:0005524	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0005730	GO:GO:0005737	GO:GO:0006139	GO:GO:0006364	GO:GO:0008150
GO:GO:0008152	GO:GO:0009987	GO:GO:0010501	GO:GO:0016787	InterPro:Helicase_ATP-bd	InterPro:Helicase_C
InterPro:IPR001650	InterPro:IPR014001	InterPro:IPR014014	InterPro:P-loop_NTPase	PFAM:PF00270	PFAM:PF00271
ScanProsite:PS00039	PFscan:PS51192	PFscan:PS51194	PFscan:PS51195	PANTHER:PTHR24031	PANTHER:PTHR24031:SF78
InterPro:RNA-helicase_DEAD-box_CS	InterPro:RNA_helicase_DEAD_Q_motif	SMART:SM00487	SMART:SM00490	SUPFAM:SSF52540	UniParc:UPI00021098B7
ArrayExpress:VIT_01s0010g01890	EnsemblPlantsGene:VIT_01s0010g01890	EnsemblPlants:VIT_01s0010g01890.t01	SEG:seg	:	:

Description

No Description!

Coordinates

chr1:+:18487530..18519686

Molecular Weight (calculated)

45489.5 Da

IEP (calculated)

9.008

GRAVY (calculated)

-0.204

Length

411 amino acids

Sequence
(BLAST)

001: MAEDNKEVKS FKDLGICEQL VEACENLGWK TPSKIQAEAI PHALEGKDLI GLAQTGSGKT GAFALPILQA LLDTPQVLFA CVLSPTRELA IQIAEQFEAL
101: GSGIGLKCAV LVGGVDHTQQ AIALAKRPHI VVLDEADRLL NDDFEKAIDE ILSVIPQERK TYLFSATMTK KVRKLQRACL RNPVKIEAGS KYSTVDTLKQ
201: QYRFVPAKYK ECYLVYILTE LSGSTTMVFT RTCDATRLLA LLLRNLGLGA IPISGHMSQT KRLGALNKFK AGECNILICT DVASRGLDIP SVDMVINYDI
301: PSNSKDYIHR VGRTAHAGRS GVAISLVNQY ELEWYIQIEK LIGKKLPEFP AQEEEVLLLL ERVTEAKRIS QMKIKETGGK KKRRGGDEGE EEIDRYLASK
401: NGKSSKKLKK R

Best Arabidopsis Sequence Match ( AT5G60990.1 )
(BLAST)

001: MEEENEVVKT FAELGVREEL VKACERLGWK NPSKIQAEAL PFALEGKDVI GLAQTGSGKT GAFAIPILQA LLEYVYDSEP KKGRRPDPAF FACVLSPTRE
101: LAIQIAEQFE ALGADISLRC AVLVGGIDRM QQTIALGKRP HVIVATPGRL WDHMSDTKGF SLKSLKYLVL DEADRLLNED FEKSLNQILE EIPLERKTFL
201: FSATMTKKVR KLQRACLRNP VKIEAASKYS TVDTLKQQYR FVAAKYKDCY LVYILSEMPE STSMIFTRTC DGTRFLALVL RSLGFRAIPI SGQMTQSKRL
301: GALNKFKAGE CNILVCTDVA SRGLDIPSVD VVINYDIPTN SKDYIHRVGR TARAGRSGVG ISLVNQYELE WYIQIEKLIG KKLPEYPAEE DEVLSLLERV
401: AEAKKLSAMN MKESGGRKRR GEDDEESERF LGGNKDRGNK ERGGNKDKKS SKKFKR

Arabidopsis Description

RH10DEAD-box ATP-dependent RNA helicase 10 [Source:UniProtKB/Swiss-Prot;Acc:Q8GY84]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.