Subcellular Localization
min:
: max
Winner_takes_all: mitochondrion, nucleus
Predictor Summary:
Predictor Summary:
- mitochondrion 4
- nucleus 2
- cytosol 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS6A01G114900.1 | Wheat | nucleus | 91.46 | 96.06 |
| TraesCS6D01G103400.1 | Wheat | nucleus | 87.92 | 95.05 |
| TraesCS2B01G150800.1 | Wheat | mitochondrion | 88.12 | 81.98 |
| Os03t0669000-01 | Rice | cytosol, nucleus, plastid | 75.0 | 76.27 |
| HORVU6Hr1G020570.1 | Barley | plastid | 88.33 | 74.91 |
| OQU93356 | Sorghum | cytosol | 70.62 | 74.67 |
| Zm00001d048477_P001 | Maize | plastid | 28.75 | 73.8 |
| Zm00001d014787_P001 | Maize | nucleus | 70.62 | 72.9 |
| Os07t0660000-00 | Rice | cytosol | 63.33 | 68.31 |
| VIT_01s0010g01890.t01 | Wine grape | nucleus | 56.04 | 65.45 |
| Solyc10g007550.2.1 | Tomato | cytosol, nucleus | 58.75 | 64.24 |
| KRH65120 | Soybean | cytosol | 58.12 | 63.55 |
| CDY42845 | Canola | cytosol | 58.33 | 62.36 |
| KRH48210 | Soybean | nucleus | 41.46 | 62.19 |
| CDY47007 | Canola | cytosol | 58.12 | 62.14 |
| Bra029342.1-P | Field mustard | cytosol | 58.12 | 61.73 |
| AT5G60990.1 | Thale cress | nucleus | 57.92 | 60.96 |
| VIT_11s0065g01090.t01 | Wine grape | cytosol | 60.62 | 53.99 |
| GSMUA_Achr8P34380_001 | Banana | cytosol | 61.67 | 40.72 |
| TraesCS2B01G179900.1 | Wheat | cytosol | 35.0 | 32.88 |
| TraesCS5B01G120400.1 | Wheat | nucleus | 28.96 | 23.97 |
| TraesCS6B01G342900.1 | Wheat | nucleus | 26.67 | 23.44 |
| TraesCS3B01G252700.2 | Wheat | nucleus | 22.71 | 22.85 |
| TraesCS1B01G037600.1 | Wheat | nucleus | 28.33 | 22.08 |
| TraesCS3B01G252600.1 | Wheat | plastid | 24.79 | 20.34 |
| TraesCS3B01G116900.1 | Wheat | plastid | 27.08 | 20.22 |
| TraesCS5B01G378100.1 | Wheat | nucleus | 30.83 | 19.0 |
| TraesCS7B01G213800.1 | Wheat | nucleus | 11.04 | 17.15 |
| TraesCS2B01G247500.1 | Wheat | nucleus | 25.62 | 16.12 |
| TraesCS2B01G384300.1 | Wheat | nucleus | 27.92 | 16.05 |
| TraesCS4B01G341100.1 | Wheat | plastid | 27.92 | 15.69 |
| TraesCS6B01G455000.1 | Wheat | cytosol | 25.0 | 14.23 |
| TraesCS7B01G232200.1 | Wheat | mitochondrion | 24.58 | 12.18 |
Protein Annotations
| Gene3D:3.40.50.300 | MapMan:35.1 | InterPro:DEAD/DEAH_box_helicase_dom | GO:GO:0000166 | GO:GO:0003674 | GO:GO:0003676 |
| GO:GO:0005488 | GO:GO:0005524 | InterPro:Helicase_ATP-bd | InterPro:Helicase_C | InterPro:IPR001650 | InterPro:IPR014001 |
| InterPro:IPR014014 | InterPro:P-loop_NTPase | PFAM:PF00270 | PFAM:PF00271 | ScanProsite:PS00039 | PFscan:PS51192 |
| PFscan:PS51194 | PFscan:PS51195 | PANTHER:PTHR24031 | PANTHER:PTHR24031:SF78 | InterPro:RNA-helicase_DEAD-box_CS | InterPro:RNA_helicase_DEAD_Q_motif |
| SMART:SM00487 | SMART:SM00490 | SUPFAM:SSF52540 | EnsemblPlantsGene:TraesCS6B01G142500 | EnsemblPlants:TraesCS6B01G142500.1 | TIGR:cd00079 |
| TIGR:cd00268 | SEG:seg | : | : | : | : |
Description
No Description!
Coordinates
chr6B:-:142229851..142234885
Molecular Weight (calculated)
53433.3 Da
IEP (calculated)
9.253
GRAVY (calculated)
-0.213
Length
480 amino acids
Sequence
(BLAST)
(BLAST)
001: MLCPLHKSTA RHASQRKITL VAMTVDKEVA GGGKVQQAEP EPEPEPAAEA LTFAELGICP ELVEACDAMG WKQPTKIQAG AMPYALKGRD LIGLGQTGSG
101: KTGAFALPII QALIEHPQPF FACVMLPTRE LAIQIAEQFE ALGSAIGLVC SVLVGGVDRM QQVLSIAKRP HIVVGTPGRL LDHLKDTKGF SLTKLKYLVL
201: DEADKLLNLE FKESLDEILN VIPKERITYL FSATMTKKVS KLQRACLRNP VKVEVSSKYS TVDTLKEEWY FVPADYKDCY LVHVLNKLPG SMTMIFVRTC
301: ETTRLLALTL RNLGFKALSI SGQMSQDKRL GALNKFKAKE FNILICTDVA SRGLDIQGVD VVMNYDIPMN SKDYVHRVGR TARAGQSGYA VSFVNQYESL
401: WFKMIEALLG KEILVRTADA DEILILREHI SDSKRIALTK LKEDGGHKKR RKAEDEDEEE EEAPRGRRKP RSFKKSKGRR
101: KTGAFALPII QALIEHPQPF FACVMLPTRE LAIQIAEQFE ALGSAIGLVC SVLVGGVDRM QQVLSIAKRP HIVVGTPGRL LDHLKDTKGF SLTKLKYLVL
201: DEADKLLNLE FKESLDEILN VIPKERITYL FSATMTKKVS KLQRACLRNP VKVEVSSKYS TVDTLKEEWY FVPADYKDCY LVHVLNKLPG SMTMIFVRTC
301: ETTRLLALTL RNLGFKALSI SGQMSQDKRL GALNKFKAKE FNILICTDVA SRGLDIQGVD VVMNYDIPMN SKDYVHRVGR TARAGQSGYA VSFVNQYESL
401: WFKMIEALLG KEILVRTADA DEILILREHI SDSKRIALTK LKEDGGHKKR RKAEDEDEEE EEAPRGRRKP RSFKKSKGRR
001: MEEENEVVKT FAELGVREEL VKACERLGWK NPSKIQAEAL PFALEGKDVI GLAQTGSGKT GAFAIPILQA LLEYVYDSEP KKGRRPDPAF FACVLSPTRE
101: LAIQIAEQFE ALGADISLRC AVLVGGIDRM QQTIALGKRP HVIVATPGRL WDHMSDTKGF SLKSLKYLVL DEADRLLNED FEKSLNQILE EIPLERKTFL
201: FSATMTKKVR KLQRACLRNP VKIEAASKYS TVDTLKQQYR FVAAKYKDCY LVYILSEMPE STSMIFTRTC DGTRFLALVL RSLGFRAIPI SGQMTQSKRL
301: GALNKFKAGE CNILVCTDVA SRGLDIPSVD VVINYDIPTN SKDYIHRVGR TARAGRSGVG ISLVNQYELE WYIQIEKLIG KKLPEYPAEE DEVLSLLERV
401: AEAKKLSAMN MKESGGRKRR GEDDEESERF LGGNKDRGNK ERGGNKDKKS SKKFKR
101: LAIQIAEQFE ALGADISLRC AVLVGGIDRM QQTIALGKRP HVIVATPGRL WDHMSDTKGF SLKSLKYLVL DEADRLLNED FEKSLNQILE EIPLERKTFL
201: FSATMTKKVR KLQRACLRNP VKIEAASKYS TVDTLKQQYR FVAAKYKDCY LVYILSEMPE STSMIFTRTC DGTRFLALVL RSLGFRAIPI SGQMTQSKRL
301: GALNKFKAGE CNILVCTDVA SRGLDIPSVD VVINYDIPTN SKDYIHRVGR TARAGRSGVG ISLVNQYELE WYIQIEKLIG KKLPEYPAEE DEVLSLLERV
401: AEAKKLSAMN MKESGGRKRR GEDDEESERF LGGNKDRGNK ERGGNKDKKS SKKFKR
Arabidopsis Description
RH10DEAD-box ATP-dependent RNA helicase 10 [Source:UniProtKB/Swiss-Prot;Acc:Q8GY84]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.