Factsheet for Solyc10g007550.2.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus, cytosol

Predictor Summary:

nucleus 2
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

nucleus: 28394025

msms PMID: 28394025 doi

AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema

Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_01s0010g01890.t01	Wine grape	nucleus	79.04	84.43
KRH65120	Soybean	cytosol	79.5	79.5
KRH48210	Soybean	nucleus	57.4	78.75
CDY42845	Canola	cytosol	79.73	77.95
CDY47007	Canola	cytosol	79.5	77.73
Bra029342.1-P	Field mustard	cytosol	79.5	77.21
AT5G60990.1	Thale cress	nucleus	79.73	76.75
VIT_11s0065g01090.t01	Wine grape	cytosol	84.28	68.65
OQU93356	Sorghum	cytosol	66.74	64.54
Zm00001d014787_P001	Maize	nucleus	66.06	62.37
TraesCS6A01G114900.1	Wheat	nucleus	64.92	62.36
TraesCS2D01G131200.1	Wheat	nucleus	64.46	61.79
TraesCS2A01G128700.1	Wheat	nucleus	64.46	61.79
Zm00001d048477_P001	Maize	plastid	25.97	60.96
KXG22990	Sorghum	cytosol	61.05	60.22
Os03t0669000-01	Rice	cytosol, nucleus, plastid	64.69	60.17
TraesCS6D01G103400.1	Wheat	nucleus	60.82	60.14
TraesCS6B01G142500.1	Wheat	mitochondrion, nucleus	64.24	58.75
Os07t0660000-00	Rice	cytosol	59.0	58.2
TraesCS2B01G150800.1	Wheat	mitochondrion	64.24	54.65
HORVU2Hr1G022490.2	Barley	nucleus	60.59	53.96
HORVU6Hr1G020570.1	Barley	plastid	64.01	49.65
GSMUA_Achr8P34380_001	Banana	cytosol	76.77	46.35
Solyc10g005520.2.1	Tomato	cytosol	43.28	38.93
Solyc03g114370.2.1	Tomato	nucleus	33.26	25.8
Solyc02g078880.2.1	Tomato	nucleus	30.98	22.9
Solyc07g042270.2.1	Tomato	nucleus	30.98	22.78
Solyc04g081580.2.1	Tomato	nucleus	34.4	20.3
Solyc10g009070.2.1	Tomato	nucleus	32.57	18.22
Solyc07g064520.2.1	Tomato	nucleus	30.98	18.04
Solyc09g090740.2.1	Tomato	nucleus	32.8	18.02
Solyc12g056340.1.1	Tomato	cytosol, nucleus, plastid	28.25	15.4
Solyc01g095740.2.1	Tomato	nucleus	27.79	14.02

Protein Annotations

Gene3D:3.40.50.300	MapMan:35.1	InterPro:DEAD/DEAH_box_helicase_dom	GO:GO:0000166	GO:GO:0003674	GO:GO:0003676
GO:GO:0003824	GO:GO:0004004	GO:GO:0004386	GO:GO:0005488	GO:GO:0005524	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005730	GO:GO:0005737	GO:GO:0006139
GO:GO:0006364	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0010501	GO:GO:0016787
InterPro:Helicase_ATP-bd	InterPro:Helicase_C	InterPro:IPR001650	InterPro:IPR014001	InterPro:IPR014014	UniProt:K4CXT4
EMBL:KJ713393	InterPro:P-loop_NTPase	PFAM:PF00270	PFAM:PF00271	ScanProsite:PS00039	PFscan:PS51192
PFscan:PS51194	PFscan:PS51195	PANTHER:PTHR24031	PANTHER:PTHR24031:SF78	InterPro:RNA-helicase_DEAD-box_CS	InterPro:RNA_helicase_DEAD_Q_motif
SMART:SM00487	SMART:SM00490	SUPFAM:SSF52540	EnsemblPlantsGene:Solyc10g007550.2	EnsemblPlants:Solyc10g007550.2.1	UniParc:UPI000276B3BA
SEG:seg	:	:	:	:	:

Description

DEAD-box ATP-dependent RNA helicase 10 [Source:Projected from Arabidopsis thaliana (AT5G60990) UniProtKB/Swiss-Prot;Acc:Q8GY84]

Coordinates

chr10:-:1854624..1864124

Molecular Weight (calculated)

48900.6 Da

IEP (calculated)

9.443

GRAVY (calculated)

-0.294

Length

439 amino acids

Sequence
(BLAST)

001: MDESKEETKS FKELGVCDQL IEACDNLGWK NPSKIQAEAM PHAFEGKDLI GLAQTGSGKT GAFAIPILQS LLDSPHAFFA CVLSPTRELA IQIAEQFEAL
101: GSGIGVKCAV LVGGIDQVQQ SIALGKRPHI VVATPGRLLD HLSNTKGFSL RTIKYLVLDE ADRLLNEDFE KALDQILNAI PHERRTYLFS ATMTKKVRKL
201: QRACLRNPVK IEAASKYSTV DTLKQQYRFL PAKYKDCYLI YILTEMSGST SMVFTRTCDA TRLLALMLRN LGLRAIPISG QMTQDKRLGA LNKFKAGECN
301: ILICTDVASR GLDIPSVDMV INYDIPTNSK DYIHRVGRTA RAGRSGVAIS LVNQYELEWY IQIEKLIGKK LPEYPAEEEE VLLLLERVTE AKRISLMKIK
401: ETGGKRKHRG GGDDGDDQEV HKYLGVNKKG KQSKKPKRK

Best Arabidopsis Sequence Match ( AT5G60990.1 )
(BLAST)

001: MEEENEVVKT FAELGVREEL VKACERLGWK NPSKIQAEAL PFALEGKDVI GLAQTGSGKT GAFAIPILQA LLEYVYDSEP KKGRRPDPAF FACVLSPTRE
101: LAIQIAEQFE ALGADISLRC AVLVGGIDRM QQTIALGKRP HVIVATPGRL WDHMSDTKGF SLKSLKYLVL DEADRLLNED FEKSLNQILE EIPLERKTFL
201: FSATMTKKVR KLQRACLRNP VKIEAASKYS TVDTLKQQYR FVAAKYKDCY LVYILSEMPE STSMIFTRTC DGTRFLALVL RSLGFRAIPI SGQMTQSKRL
301: GALNKFKAGE CNILVCTDVA SRGLDIPSVD VVINYDIPTN SKDYIHRVGR TARAGRSGVG ISLVNQYELE WYIQIEKLIG KKLPEYPAEE DEVLSLLERV
401: AEAKKLSAMN MKESGGRKRR GEDDEESERF LGGNKDRGNK ERGGNKDKKS SKKFKR

Arabidopsis Description

RH10DEAD-box ATP-dependent RNA helicase 10 [Source:UniProtKB/Swiss-Prot;Acc:Q8GY84]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.