CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 2
nucleus 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus, plastid
BaCelLo:	plastid
iPSORT:	plastid
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH65120	Soybean	cytosol	95.94	69.93
Zm00001d048477_P001	Maize	plastid	33.75	57.75
Solyc10g007550.2.1	Tomato	cytosol, nucleus	78.75	57.4
VIT_01s0010g01890.t01	Wine grape	nucleus	72.81	56.69
CDY42845	Canola	cytosol	75.31	53.67
CDY47007	Canola	cytosol	75.31	53.67
Bra029342.1-P	Field mustard	cytosol	75.31	53.32
AT5G60990.1	Thale cress	nucleus	75.31	52.85
VIT_11s0065g01090.t01	Wine grape	cytosol	78.44	46.57
TraesCS6D01G103400.1	Wheat	nucleus	62.5	45.05
TraesCS6A01G114900.1	Wheat	nucleus	62.81	43.98
OQU93356	Sorghum	cytosol	61.88	43.61
TraesCS2A01G128700.1	Wheat	nucleus	62.19	43.45
TraesCS2D01G131200.1	Wheat	nucleus	61.88	43.23
Zm00001d014787_P001	Maize	nucleus	61.56	42.37
Os03t0669000-01	Rice	cytosol, nucleus, plastid	61.25	41.53
TraesCS6B01G142500.1	Wheat	mitochondrion, nucleus	62.19	41.46
KXG22990	Sorghum	cytosol	57.19	41.12
Os07t0660000-00	Rice	cytosol	56.88	40.9
HORVU2Hr1G022490.2	Barley	nucleus	62.19	40.37
TraesCS2B01G150800.1	Wheat	mitochondrion	61.88	38.37
HORVU6Hr1G020570.1	Barley	plastid	62.19	35.16
GSMUA_Achr8P34380_001	Banana	cytosol	70.94	31.22
KRH43700	Soybean	cytosol	42.19	23.04
KRH13749	Soybean	cytosol, plastid	41.56	22.5
KRH62970	Soybean	nucleus	32.5	19.19
KRH54980	Soybean	nucleus	10.31	18.54
KRH54795	Soybean	nucleus	31.56	18.46
KRH03838	Soybean	nucleus	33.12	18.43
KRH56711	Soybean	nucleus	32.81	18.36
KRH37539	Soybean	nucleus	30.0	17.81
KRH12590	Soybean	nucleus	29.69	17.5
KRG97683	Soybean	nucleus	31.56	17.15
KRH14417	Soybean	cytosol, nucleus	27.19	16.48
KRH37947	Soybean	plastid	28.12	15.28
KRH31184	Soybean	nucleus	30.62	14.74
KRH73730	Soybean	nucleus	30.0	12.87
KRH46113	Soybean	nucleus	30.31	12.81
KRH47920	Soybean	nucleus	28.12	12.8
KRG98832	Soybean	nucleus	30.0	12.65
KRH41139	Soybean	nucleus	26.56	12.02
KRH37970	Soybean	cytosol	11.88	11.88
KRH48208	Soybean	nucleus	30.0	11.85
KRH09570	Soybean	nucleus	28.75	11.84
KRH64859	Soybean	nucleus	28.12	11.58
KRH06491	Soybean	nucleus	28.12	11.17
KRH65117	Soybean	plastid	27.81	10.8
KRH59841	Soybean	nucleus	13.44	8.13

Protein Annotations

Gene3D:3.40.50.300	MapMan:35.1	EMBL:ACUP02004210	InterPro:DEAD/DEAH_box_helicase_dom	EnsemblPlantsGene:GLYMA_07G075000	GO:GO:0000166
GO:GO:0003674	GO:GO:0003676	GO:GO:0003824	GO:GO:0004386	GO:GO:0005488	GO:GO:0005524
GO:GO:0016787	InterPro:Helicase_ATP-bd	InterPro:Helicase_C	InterPro:IPR001650	InterPro:IPR014001	UniProt:K7L091
EnsemblPlants:KRH48210	ProteinID:KRH48210	ProteinID:KRH48210.1	InterPro:P-loop_NTPase	PFAM:PF00270	PFAM:PF00271
ScanProsite:PS00039	PFscan:PS51192	PFscan:PS51194	PANTHER:PTHR24031	PANTHER:PTHR24031:SF78	InterPro:RNA-helicase_DEAD-box_CS
SMART:SM00490	SUPFAM:SSF52540	UniParc:UPI0002965D4A	SEG:seg	:	:

Description

hypothetical protein

Coordinates

chr7:-:6821674..6829551

Molecular Weight (calculated)

36556.7 Da

IEP (calculated)

9.900

GRAVY (calculated)

-0.389

Length

320 amino acids

Sequence
(BLAST)

001: MVQQSIKIAK QPHIIVGTPR RVLDHLKHTK GFSLGRLKYL VLDEADRLLN EDFEESLNEI LQMIPRERKT FLFSATMTKK VQKLQRVCLR NPVKIEASSK
101: YSTVDTLKQQ YLFLPAKHKD CYFVYILTEM SGSTSMVFTC TCDATRLLAL ILRNLGLKAI PINGHMSQSK RLGASNKFKS GECNILLCTD VASRGLDIPT
201: VDMVINYDIP TNSKDYIHRV GRTARAGRFG VAISLVNQYE LGWYIQIEKL IGNKLPEYPA QEEEVLLLEE RVSEAKRLAV MKMKETGGKK KRRGEEDYDG
301: EDIDKYLGLK EGKSSKKFRR

Best Arabidopsis Sequence Match ( AT5G60990.1 )
(BLAST)

001: MEEENEVVKT FAELGVREEL VKACERLGWK NPSKIQAEAL PFALEGKDVI GLAQTGSGKT GAFAIPILQA LLEYVYDSEP KKGRRPDPAF FACVLSPTRE
101: LAIQIAEQFE ALGADISLRC AVLVGGIDRM QQTIALGKRP HVIVATPGRL WDHMSDTKGF SLKSLKYLVL DEADRLLNED FEKSLNQILE EIPLERKTFL
201: FSATMTKKVR KLQRACLRNP VKIEAASKYS TVDTLKQQYR FVAAKYKDCY LVYILSEMPE STSMIFTRTC DGTRFLALVL RSLGFRAIPI SGQMTQSKRL
301: GALNKFKAGE CNILVCTDVA SRGLDIPSVD VVINYDIPTN SKDYIHRVGR TARAGRSGVG ISLVNQYELE WYIQIEKLIG KKLPEYPAEE DEVLSLLERV
401: AEAKKLSAMN MKESGGRKRR GEDDEESERF LGGNKDRGNK ERGGNKDKKS SKKFKR

Arabidopsis Description

RH10DEAD-box ATP-dependent RNA helicase 10 [Source:UniProtKB/Swiss-Prot;Acc:Q8GY84]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.