CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
plastid 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus, plastid
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	nucleus
YLoc:	nucleus

nucleus: 21132161
nucleus: 27291164
nucleus: 28499913

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

msms PMID: 28499913 doi

S Komatsu, X Wang, X Yin, Y Nanjo, H Ohyanagi, K Sakata

Department of Life Science and Informatics, Maebashi Institute of Technology, Maebashi 371-0816, Japan. Electronic address: ksakata@maebashi-it.ac.jp., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan. Electronic address: komatsu.setsuko.fu@u.tsukuba.ac.jp., King Abdullah University of Science and Technology (KAUST), Computational Bioscience Research Center (CBRC), Thuwal 23955-6900, Saudi Arabia.

msms PMID: 27291164 doi

X Yin, S Komatsu

Graduate School of Life and Environmental Sciences, University of Tsukuba , Tsukuba 305-8572, Japan., National Institute of Crop Science, National Agriculture and Food Research Organization , Tsukuba 305-8518, Japan.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH65117	Soybean	plastid	90.0	88.47
KRH54980	Soybean	nucleus	16.54	75.28
VIT_05s0049g02360.t01	Wine grape	nucleus	69.26	71.19
PGSC0003DMT400003801	Potato	nucleus	68.4	69.51
Solyc09g090740.2.1	Tomato	nucleus	68.15	69.09
Bra021205.1-P	Field mustard	mitochondrion, nucleus, plastid	50.86	65.5
GSMUA_Achr5P10150_001	Banana	nucleus	56.67	59.61
CDY52719	Canola	nucleus, plastid	58.89	57.54
CDY34979	Canola	nucleus, plastid	58.89	57.33
AT3G16840.2	Thale cress	nucleus	57.28	56.11
OQU81941	Sorghum	nucleus	56.42	54.28
Os04t0510400-01	Rice	nucleus	55.68	54.21
TraesCS2B01G384300.1	Wheat	nucleus	55.8	54.13
TraesCS2D01G363700.1	Wheat	nucleus	55.68	53.95
Zm00001d003031_P002	Maize	nucleus	55.93	53.55
TraesCS2A01G366700.1	Wheat	nucleus	55.68	53.44
HORVU2Hr1G088480.2	Barley	nucleus, plastid	55.93	52.19
KRH65120	Soybean	cytosol	18.4	33.94
KRH48210	Soybean	nucleus	11.85	30.0
KRH37970	Soybean	cytosol	11.11	28.12
KRH43700	Soybean	cytosol	19.38	26.79
KRH13749	Soybean	cytosol, plastid	19.38	26.57
KRG97683	Soybean	nucleus	18.52	25.47
KRH56711	Soybean	nucleus	16.91	23.95
KRH62970	Soybean	nucleus	15.8	23.62
KRH03838	Soybean	nucleus	16.67	23.48
KRH54795	Soybean	nucleus	15.56	23.03
KRH31184	Soybean	nucleus	18.64	22.71
KRH12590	Soybean	nucleus	15.06	22.47
KRH37539	Soybean	nucleus	14.57	21.89
KRH46113	Soybean	nucleus	20.37	21.8
KRG98832	Soybean	nucleus	20.12	21.48
KRH37947	Soybean	plastid	15.43	21.22
KRH73730	Soybean	nucleus	18.64	20.24
KRH47920	Soybean	nucleus	17.53	20.2
KRH41139	Soybean	nucleus	16.54	18.95
KRH64859	Soybean	nucleus	18.02	18.79
KRH09570	Soybean	nucleus	17.9	18.66
KRH06491	Soybean	nucleus	17.78	17.87
KRH14417	Soybean	cytosol, nucleus	11.23	17.23
KRH59841	Soybean	nucleus	10.25	15.69

Protein Annotations

EntrezGene:100806018	Gene3D:3.40.50.300	MapMan:35.1	EMBL:ACUP02004210	ncoils:Coil	InterPro:DEAD/DEAH_box_helicase_dom
EnsemblPlantsGene:GLYMA_07G074800	GO:GO:0000166	GO:GO:0003674	GO:GO:0003676	GO:GO:0003824	GO:GO:0004004
GO:GO:0005488	GO:GO:0005524	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0005730	GO:GO:0005737	GO:GO:0006139	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987
GO:GO:0010501	GO:GO:0016787	InterPro:Helicase_ATP-bd	InterPro:Helicase_C	UniProt:I1KIF1	InterPro:IPR001650
InterPro:IPR014001	InterPro:IPR014014	EnsemblPlants:KRH48208	ProteinID:KRH48208	ProteinID:KRH48208.1	InterPro:P-loop_NTPase
PFAM:PF00270	PFAM:PF00271	ScanProsite:PS00039	PFscan:PS51192	PFscan:PS51194	PFscan:PS51195
PANTHER:PTHR24031	PANTHER:PTHR24031:SF91	InterPro:RNA-helicase_DEAD-box_CS	InterPro:RNA_helicase_DEAD_Q_motif	SMART:SM00487	SMART:SM00490
SUPFAM:SSF52540	UniParc:UPI00023381E7	SEG:seg	:	:	:

Description

hypothetical protein

Coordinates

chr7:-:6806841..6815545

Molecular Weight (calculated)

90922.6 Da

IEP (calculated)

9.583

GRAVY (calculated)

-0.668

Length

810 amino acids

Sequence
(BLAST)

001: MEAAAATANS SQRKPKRKRA SAKSDPELDR LDSLPWNSAL PQNDDDDAFS LFIGSNELEG GFLSLEEIDE AEYGLSIPEP EVDKRKTKKK KSEQNENVKK
101: QQQDGVDSAC SDDTVVEAEL DESLKSKEKK KKKKKTKNKK KDAREDQTVE PSDAGLDTNV KDDIGEEDVD ETEFYAWNEL RLHPLLLKAI CKLGFKEPTP
201: IQKACIPAAA HQGKDVVGAA ETGSGKTLAF GLPILQRLLE EREKAGNMVG ERGEEPEKYA STGLLRALII APTRELALQV TDHLKAVAKH INVRVTPIVG
301: GILAEKQERL LKAKPEIVVG TPGRLWELMS AGEKHLVELH SLSFFVLDEA DRMVQNGHFK ELQSIIDMLP MSNNSAEDNS QHVQSCVTVS SYQRKKRQTL
401: VFSATVALSS DFRKKLKRGS IKQKQSLTDG LNSIETLSER AGMRSNAAII DLTNPSILAT KLEESFIECR EEDKDAYLYY ILTVHGQGRT IVFCTSIAAL
501: RHISSILRIL GINVWTLHAQ MQQRARLKAM DRFRENENGI LVATDVAARG LDIPGVRTVV HYQLPHSAEV YVHRSGRTAR ASAEGCSIAL ISSRDTSKFA
601: SLCKSFSKDN FQRFPLENSY MPEVLKRLSL ARQIDKITRK DSQEKAEKNW FDRNSSSVEL VTESYDSEEE QVNKHKQMKA SSRQLKKLQE DLKILISRPL
701: QSKTFSHRYL AGAGVTPLMQ EQLQQLARQK LSDHQGSGLG KKGKLVVIGQ DCVDALQALR SAGEEVRMDA KDLAGKQRNM QNLKRKRKEE KKRLRDQRRK
801: QKKKLKYGDE

Best Arabidopsis Sequence Match ( AT3G16840.1 )
(BLAST)

001: MVTGDKESSL MKKRNKRSHK RKREEDFERI DSLPWSSSIP IGEDDEGESF STLFSGSGQL DGGFLSLEEI DEADYHLTLP TIESEITERK QSPEDDDDTN
101: ETVDEMIEGE EAEEDGEGRD DEDDEDDEET RKKKEKKAKR NKEKKKEKKK KKQKKINEAA KNQDASAVSC DGDDTVEEQV EEEEIPPEFS AWSSMRLHPL
201: LMKSIYRLDF KEPTKIQKAC FNVAAYQGKD VIGAAETGSG KTLAFGLPIL QRLLDEREKV GKLYALKGEE AQKYAADGYL RALIITPTRE LALQVTEHLE
301: NAAKNLSVKV VPIVGGMFSE KQERRLKEKP EIVVATPGRL WELMSAGEKH LVELHSLSFF VLDEADRMVE RGHFRELQSI LDLLPVTDKP NEGKTQTVKS
401: NDTVLNVPKK KRQTFVFSAT IALSSDFRKK LKRGSSKSKQ SSSGEVNSIE VLSERAGMRD NVAIIDLTTT SILAPKIEES FIKCEEKEKD AYLYYILSVH
501: GQGRTIVFCT SVTDLRHISG LLKILGLDVC TLFSEMKQRA RLKSIDRFRA SENGILIATD LVARGIDIKN VRTIIHYKLP HSAEVYVHRC GRTARAFADG
601: CSIALIEPNE TSKFYTLCKS FSMESVKIFP LDNSYMPAVR KRLYLARQIY EIERKGSREN ADRTWLKKHA ESMELELDDE ESEEERVDNV RQRKATSARL
701: NKLKEELSTL LSHPMQPKKF SGRYFAGVGV STLMQNQFVE LKKQKQAQMQ IGGDIKRRKL VVINQNCIEP LQALRAGGNE MLKMKGQSAE KRRDIASLKK
801: KRKEEKIGRR DQRRNQKKQR KLMASS

Arabidopsis Description

P-loop containing nucleoside triphosphate hydrolases superfamily protein [Source:UniProtKB/TrEMBL;Acc:A0A178VJW0]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.