CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_13s0067g01900.t01	Wine grape	nucleus	85.4	84.54
KRH31184	Soybean	nucleus	95.25	84.36
Solyc02g078880.2.1	Tomato	nucleus	77.76	77.1
PGSC0003DMT400057606	Potato	nucleus	77.76	73.52
Bra028757.1-P	Field mustard	nucleus	71.14	70.54
CDY04952	Canola	nucleus	71.14	70.54
AT5G05450.1	Thale cress	nucleus	70.97	70.49
CDY14112	Canola	cytosol	70.97	70.37
Bra009114.1-P	Field mustard	nucleus	69.27	68.57
CDX70149	Canola	nucleus	69.61	68.56
GSMUA_Achr8P01870_001	Banana	cytosol	73.01	66.05
AT1G71370.1	Thale cress	nucleus	60.78	64.16
Zm00001d024719_P001	Maize	nucleus	36.33	63.31
Zm00001d027279_P001	Maize	nucleus	30.22	62.46
CDX96202	Canola	cytosol	29.37	62.23
Os01t0164500-01	Rice	plastid	67.74	61.67
AT1G71280.1	Thale cress	nucleus	48.56	61.51
EES00264	Sorghum	nucleus, plastid	66.21	60.56
TraesCS3B01G116900.1	Wheat	plastid	65.03	59.56
TraesCS3A01G100100.1	Wheat	plastid	65.03	59.47
TraesCS3D01G100800.1	Wheat	plastid	64.52	59.1
HORVU3Hr1G018130.7	Barley	plastid	65.36	56.87
Zm00001d041799_P001	Maize	cytosol	25.13	56.06
Zm00001d039746_P001	Maize	nucleus	66.21	53.79
Zm00001d002007_P002	Maize	cytosol, mitochondrion, plastid	27.84	45.3
KRH65120	Soybean	cytosol	25.47	34.17
KRH48210	Soybean	nucleus	17.15	31.56
KRH62970	Soybean	nucleus	26.99	29.34
KRH54795	Soybean	nucleus	26.49	28.52
KRH03838	Soybean	nucleus	27.67	28.35
KRH56711	Soybean	nucleus	27.16	27.97
KRH12590	Soybean	nucleus	24.96	27.07
KRH37970	Soybean	cytosol	13.92	25.62
KRH37539	Soybean	nucleus	23.09	25.23
KRH37947	Soybean	plastid	22.92	22.92
KRH43700	Soybean	cytosol	21.9	22.01
KRH13749	Soybean	cytosol, plastid	22.07	22.0
KRH73730	Soybean	nucleus	26.99	21.31
KRH46113	Soybean	nucleus	27.16	21.14
KRG98832	Soybean	nucleus	26.99	20.95
KRH14417	Soybean	cytosol, nucleus	18.34	20.45
KRH47920	Soybean	nucleus	23.43	19.63
KRH41139	Soybean	nucleus	23.26	19.38
KRH54980	Soybean	nucleus	5.6	18.54
KRH48208	Soybean	nucleus	25.47	18.52
KRH09570	Soybean	nucleus	23.09	17.5
KRH64859	Soybean	nucleus	22.75	17.25
KRH65117	Soybean	plastid	24.11	17.23
KRH06491	Soybean	nucleus	23.43	17.12
KRH59841	Soybean	nucleus	13.24	14.74

Protein Annotations

EntrezGene:100801482	Gene3D:3.40.50.300	MapMan:35.1	EMBL:ACUP02010808	ncoils:Coil	InterPro:DEAD/DEAH_box_helicase_dom
InterPro:DUF4217	EnsemblPlantsGene:GLYMA_18G024200	GO:GO:0000166	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723
GO:GO:0003824	GO:GO:0004004	GO:GO:0004386	GO:GO:0005488	GO:GO:0005524	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005730	GO:GO:0005737	GO:GO:0006139
GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0010501	GO:GO:0016787	InterPro:Helicase_ATP-bd
InterPro:Helicase_C	UniProt:I1MYZ5	InterPro:IPR001650	InterPro:IPR014001	InterPro:IPR014014	EnsemblPlants:KRG97683
ProteinID:KRG97683	ProteinID:KRG97683.1	InterPro:P-loop_NTPase	PFAM:PF00270	PFAM:PF00271	PFAM:PF13959
ScanProsite:PS00039	PFscan:PS51192	PFscan:PS51194	PFscan:PS51195	PANTHER:PTHR24031	PANTHER:PTHR24031:SF2
InterPro:RNA-helicase_DEAD-box_CS	InterPro:RNA_helicase_DEAD_Q_motif	SMART:SM00487	SMART:SM00490	SMART:SM01178	SUPFAM:SSF52540
UniParc:UPI000233F11F	SEG:seg	:	:	:	:

Description

hypothetical protein

Coordinates

chr18:+:1784471..1789898

Molecular Weight (calculated)

65968.3 Da

IEP (calculated)

9.104

GRAVY (calculated)

-0.324

Length

589 amino acids

Sequence
(BLAST)

001: MDSEFPNKAL TSTRFSDLNP PLSEPVLQAL SHSGFEFCTP VQAATIPLLC SFKDVAVDAA TGSGKTLAFV VPLVEILRRS SSHPKPHQVL GIIISPTREL
101: STQIYHVAQP FISTLANVKS MLLVGGAEVK ADLKKIEEEG ANILIGTPGR LYDIMNRMDV LDLKNLEILI LDEADRLLDM GFQKQITSII TLLPKLRRTG
201: LFSATQTEAI EELAKAGLRN PVRVEVRAET KSENGPASSK QPESSKTPSG LHIEYLECEA DKKPSQLVHI LIKNLSKKII IYFMTCACVD YWGAVLPCLS
301: VLKGFSLIPL HGKMKQSARE KALASFTSLS NGILLCTDVA ARGLDIPGVD CIVQYDPPQD PNVFIHRVGR TARLGKQGHA VVFLLPKEES YVEFLRIRRV
401: PLQERICADE ASDVVPQIRS AAKKDRDVME KGIKAFVSYI RAYKEHHCSY IFRWKELEIG KLATGFGLLQ LPSMPEVKHH SLSIDGFEPV EDINLGDIKY
501: RDKSREKQRK KNLQAKKEAK EKEPKPQKPK KTPNAPTDMR KKTARQRRAQ QTMEDEEELM HEYRLLKKLK KGTIDENEYA KLTGTEELL

Best Arabidopsis Sequence Match ( AT5G05450.1 )
(BLAST)

001: MDSSANINKA LTETRFSDLE PPLSGDIIEA LNQSDFEFCT PVQAATIPLL CSYKDVAVDA ATGSGKTLAF VVPLVEILRR STSFPPKPHQ VMGVIISPTR
101: ELSTQIYNVA QPFVSTLANV NSVLLVGGRE VKADMKIIEE EGCNVLIGTP GRLSDIMERM EILDFRNLEI LILDEADRLL EMGFQRQVNY IISRLPKQRR
201: TGLFSATQTE GVEELAKAGL RNPVRVEVRA KSKSESSQQL TNSKTPSGLH LEYMECEADK KSSQLVDLLI KNSDKKLIVF FMTCASVDYW GLVLSKIPAL
301: KSISLIPIHG DMKQNARDKA LASFTKASSG ALLCTDVAAR GLDIPGIDYV VQYDPPQDPN MFNHRAGRTA RLGRQGRAIV FLLPKEEAYV EFMRIRRVPL
401: EERKCSEDAS DVIPIIRSAA MKDRAVMEKG LKAFVSFVRA YKEHHCSFIF RWKDLEIGKL AMGYGLLYLP SMSEVKQHRL SSEGFTPVEG VKFEEIKFKD
501: KYREKQRQQN LQVRKEKRQE EKKEKGKRKR VDASASNDPK KASRKLTGKQ RQTIQTAEDE EVMDRDYKLM IKVKKGLIKE DEYERLTGDD DLF

Arabidopsis Description

RH18DEAD-box ATP-dependent RNA helicase 18 [Source:UniProtKB/Swiss-Prot;Acc:Q9FLB0]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.