Factsheet for Zm00001d039746_P001

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EES00264	Sorghum	nucleus, plastid	86.07	96.89
Zm00001d027279_P001	Maize	nucleus	37.66	95.79
Zm00001d024719_P001	Maize	nucleus	44.55	95.56
Zm00001d041799_P001	Maize	cytosol	30.62	84.09
Os01t0164500-01	Rice	plastid	73.93	82.84
TraesCS3B01G116900.1	Wheat	plastid	69.66	78.54
TraesCS3A01G100100.1	Wheat	plastid	69.52	78.26
TraesCS3D01G100800.1	Wheat	plastid	69.24	78.07
HORVU3Hr1G018130.7	Barley	plastid	69.52	74.45
VIT_13s0067g01900.t01	Wine grape	nucleus	54.9	66.89
KRG97683	Soybean	nucleus	53.79	66.21
Zm00001d002007_P002	Maize	cytosol, mitochondrion, plastid	32.97	66.02
GSMUA_Achr8P01870_001	Banana	cytosol	56.69	63.13
Solyc02g078880.2.1	Tomato	nucleus	51.31	62.63
AT5G05450.1	Thale cress	nucleus	50.34	61.55
Bra028757.1-P	Field mustard	nucleus	50.34	61.45
Bra009114.1-P	Field mustard	nucleus	49.38	60.17
PGSC0003DMT400057606	Potato	nucleus	51.03	59.39
AT1G71370.1	Thale cress	nucleus	45.1	58.6
KRH31184	Soybean	nucleus	53.66	58.5
AT1G71280.1	Thale cress	nucleus	36.41	56.77
Zm00001d000431_P001	Maize	plastid	20.0	29.84
Zm00001d014787_P001	Maize	nucleus	18.9	29.46
Zm00001d048477_P001	Maize	plastid	6.62	25.67
Zm00001d044203_P001	Maize	plasma membrane	19.59	25.36
Zm00001d010225_P001	Maize	plasma membrane	17.66	24.9
Zm00001d013056_P001	Maize	nucleus	22.48	24.85
Zm00001d023501_P001	Maize	nucleus	20.41	24.54
Zm00001d044208_P001	Maize	plastid	19.72	24.4
Zm00001d022246_P001	Maize	cytosol	17.1	23.85
Zm00001d006497_P002	Maize	nucleus	21.79	21.12
Zm00001d021127_P001	Maize	nucleus, plasma membrane	20.28	19.09
Zm00001d006113_P001	Maize	nucleus	20.14	18.5
Zm00001d018516_P002	Maize	mitochondrion	19.59	17.36
Zm00001d050315_P001	Maize	nucleus	19.45	16.79
Zm00001d003031_P002	Maize	nucleus	18.76	16.08
Zm00001d046097_P001	Maize	mitochondrion	20.28	15.71
Zm00001d032317_P001	Maize	nucleus	10.07	14.93

Protein Annotations

EntrezGene:100280924	Gene3D:3.40.50.300	MapMan:35.1	UniProt:A0A1D6MKY1	ncoils:Coil	InterPro:DEAD/DEAH_box_helicase_dom
InterPro:DUF4217	GO:GO:0000166	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0003824
GO:GO:0004386	GO:GO:0005488	GO:GO:0005524	GO:GO:0016787	InterPro:Helicase_ATP-bd	InterPro:Helicase_C
InterPro:IPR001650	InterPro:IPR014001	InterPro:IPR014014	ProteinID:ONM29869.1	InterPro:P-loop_NTPase	PFAM:PF00270
PFAM:PF00271	PFAM:PF13959	ScanProsite:PS00039	PFscan:PS51192	PFscan:PS51194	PFscan:PS51195
PANTHER:PTHR24031	PANTHER:PTHR24031:SF2	InterPro:RNA-helicase_DEAD-box_CS	InterPro:RNA_helicase_DEAD_Q_motif	SMART:SM00487	SMART:SM00490
SMART:SM01178	SUPFAM:SSF52540	UniParc:UPI00084332FD	EnsemblPlantsGene:Zm00001d039746	EnsemblPlants:Zm00001d039746_P001	EnsemblPlants:Zm00001d039746_T001
SEG:seg	:	:	:	:	:

Description

ATP-dependent rRNA helicase spb4

Coordinates

chr3:+:13655404..13661672

Molecular Weight (calculated)

81042.0 Da

IEP (calculated)

9.264

GRAVY (calculated)

-0.344

Length

725 amino acids

Sequence
(BLAST)

001: MAASTAAAAA RKGALTDQRF SELSPALSPE VVEALDRGGF QRCTPVQAAA IPHLLSHKDV AVDAATGSGK TLAFIVPVVE ILRRRSSPPK SHEVLALIIS
101: PTRELSSQIF NVAQPFFATL NGVSSMLLVG GLDIKAELKK VEEEGANILV GTPGKLFDIM HTDALEYKNL ELHLFLCMHG KQILILDEAD RLLDMGFQKH
201: INFILSMLPK LRRTGLFSAT QTKAVADLSK AGLRNPIRVE VKTEAKSTSK DAGQQELGPS ITPLGLRLEV QSIYFLFYYD CDLIFLNSSC SLQNHNLVLV
301: QYMICEASKK SSQLVDFLVQ NSGKKIMVYF ATCACVDYWA VVLPLIKSLK GSPIIAYHGK MKQSLREKAL ASFSALSSGV LVCTDVAARG LDIPSVDLIV
401: QVIFCSSLPK FESHVQASAD SKDACLFIQY DPPQDPNVFI HRAGRTARYD QEGDAIVFLL PKEDTYVEFL KLRGVPLTER ECLANTDDVI PQVDSLVQIP
501: FRDREIRSAA LEDRNVMEKG LRAFVSFVRA YKEHHCSYIF RWKDLEIGKL AMEYGLLQIP SMPEVKHHSL SLEGFISVDD VDITQIKYKD KAREKQRKKA
601: LKRKAEEEAQ NPKPERKRPP EKPEKPKRKK TGKQRQSIQT KEDLDELAHE YRLLKKLKRG DIDEEEYEKL TGFGDSDGEA SDGDGSNLDE RKKGNKAQKK
701: TKQRGKCKSG SKKFEGRSKL RSKRR

Best Arabidopsis Sequence Match ( AT5G05450.1 )
(BLAST)

001: MDSSANINKA LTETRFSDLE PPLSGDIIEA LNQSDFEFCT PVQAATIPLL CSYKDVAVDA ATGSGKTLAF VVPLVEILRR STSFPPKPHQ VMGVIISPTR
101: ELSTQIYNVA QPFVSTLANV NSVLLVGGRE VKADMKIIEE EGCNVLIGTP GRLSDIMERM EILDFRNLEI LILDEADRLL EMGFQRQVNY IISRLPKQRR
201: TGLFSATQTE GVEELAKAGL RNPVRVEVRA KSKSESSQQL TNSKTPSGLH LEYMECEADK KSSQLVDLLI KNSDKKLIVF FMTCASVDYW GLVLSKIPAL
301: KSISLIPIHG DMKQNARDKA LASFTKASSG ALLCTDVAAR GLDIPGIDYV VQYDPPQDPN MFNHRAGRTA RLGRQGRAIV FLLPKEEAYV EFMRIRRVPL
401: EERKCSEDAS DVIPIIRSAA MKDRAVMEKG LKAFVSFVRA YKEHHCSFIF RWKDLEIGKL AMGYGLLYLP SMSEVKQHRL SSEGFTPVEG VKFEEIKFKD
501: KYREKQRQQN LQVRKEKRQE EKKEKGKRKR VDASASNDPK KASRKLTGKQ RQTIQTAEDE EVMDRDYKLM IKVKKGLIKE DEYERLTGDD DLF

Arabidopsis Description

RH18DEAD-box ATP-dependent RNA helicase 18 [Source:UniProtKB/Swiss-Prot;Acc:Q9FLB0]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.