Subcellular Localization
min:
: max
Winner_takes_all: plasma membrane, nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
plasma membrane:
27341663
|
msms PMID:
27341663
doi
Bond Life Sciences Center, University of Missouri, Columbia, MO, 65211, USA., Division of Biochemistry, University of Missouri, Columbia, MO, 65211, USA., Division of Plant Sciences, University of Missouri, Columbia, MO, 65211, USA., Interdisciplinary Plant Group, University of Missouri, Columbia, MO, 65211, USA.
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| KXG35997 | Sorghum | nucleus | 95.06 | 92.19 |
| Zm00001d006113_P001 | Maize | nucleus | 90.78 | 88.59 |
| Os12t0481100-01 | Rice | nucleus | 81.82 | 78.55 |
| TraesCS5D01G385400.1 | Wheat | nucleus | 78.96 | 78.15 |
| TraesCS5B01G378100.1 | Wheat | nucleus | 78.83 | 77.92 |
| TraesCS5A01G375900.1 | Wheat | nucleus | 78.57 | 77.76 |
| HORVU5Hr1G093160.3 | Barley | nucleus | 78.18 | 72.44 |
| GSMUA_Achr8P12970_001 | Banana | nucleus | 70.65 | 71.02 |
| KRH37970 | Soybean | cytosol | 29.09 | 70.0 |
| KRH37947 | Soybean | plastid | 52.6 | 68.76 |
| VIT_18s0001g14540.t01 | Wine grape | nucleus | 64.03 | 67.35 |
| KRH46113 | Soybean | nucleus | 65.71 | 66.84 |
| Solyc04g081580.2.1 | Tomato | nucleus | 64.29 | 66.53 |
| KRG98832 | Soybean | nucleus | 65.32 | 66.27 |
| PGSC0003DMT400025551 | Potato | nucleus | 64.03 | 66.17 |
| AT4G16630.1 | Thale cress | nucleus | 60.39 | 58.94 |
| CDY40519 | Canola | nucleus | 57.79 | 58.71 |
| CDY50846 | Canola | nucleus | 60.26 | 55.3 |
| CDY53643 | Canola | nucleus | 60.52 | 55.21 |
| Bra040743.1-P | Field mustard | nucleus | 60.65 | 53.43 |
| Bra038492.1-P | Field mustard | nucleus | 55.58 | 47.14 |
| CDY32273 | Canola | nucleus | 55.58 | 46.88 |
| Zm00001d014787_P001 | Maize | nucleus | 19.09 | 31.61 |
| Zm00001d048477_P001 | Maize | plastid | 7.53 | 31.02 |
| Zm00001d022246_P001 | Maize | cytosol | 20.13 | 29.81 |
| Zm00001d027279_P001 | Maize | nucleus | 10.52 | 28.42 |
| Zm00001d024719_P001 | Maize | nucleus | 12.08 | 27.51 |
| Zm00001d044203_P001 | Maize | plasma membrane | 18.31 | 25.18 |
| Zm00001d044208_P001 | Maize | plastid | 18.96 | 24.91 |
| Zm00001d000431_P001 | Maize | plastid | 15.32 | 24.28 |
| Zm00001d023501_P001 | Maize | nucleus | 17.79 | 22.72 |
| Zm00001d013056_P001 | Maize | nucleus | 19.35 | 22.71 |
| Zm00001d010225_P001 | Maize | plasma membrane | 15.06 | 22.57 |
| Zm00001d041799_P001 | Maize | cytosol | 7.53 | 21.97 |
| Zm00001d039746_P001 | Maize | nucleus | 19.09 | 20.28 |
| Zm00001d050315_P001 | Maize | nucleus | 21.3 | 19.52 |
| Zm00001d003031_P002 | Maize | nucleus | 21.43 | 19.5 |
| Zm00001d006497_P002 | Maize | nucleus | 18.18 | 18.72 |
| Zm00001d018516_P002 | Maize | mitochondrion | 19.74 | 18.58 |
| Zm00001d002007_P002 | Maize | cytosol, mitochondrion, plastid | 8.57 | 18.23 |
| Zm00001d032317_P001 | Maize | nucleus | 10.52 | 16.56 |
| Zm00001d046097_P001 | Maize | mitochondrion | 18.57 | 15.28 |
Protein Annotations
| Gene3D:3.40.50.300 | MapMan:35.1 | UniProt:A0A1D6I8F3 | ncoils:Coil | InterPro:DEAD/DEAH_box_helicase_dom | GO:GO:0000166 |
| GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003824 | GO:GO:0004386 | GO:GO:0005488 | GO:GO:0005524 |
| GO:GO:0016787 | InterPro:Helicase_ATP-bd | InterPro:Helicase_C | InterPro:IPR001650 | InterPro:IPR014001 | InterPro:IPR014014 |
| ProteinID:ONM56330.1 | InterPro:P-loop_NTPase | PFAM:PF00270 | PFAM:PF00271 | ScanProsite:PS00039 | PFscan:PS51192 |
| PFscan:PS51194 | PFscan:PS51195 | PANTHER:PTHR24031 | PANTHER:PTHR24031:SF541 | InterPro:RNA-helicase_DEAD-box_CS | InterPro:RNA_helicase_DEAD_Q_motif |
| SMART:SM00487 | SMART:SM00490 | SUPFAM:SSF52540 | UniParc:UPI000220987D | EnsemblPlantsGene:Zm00001d021127 | EnsemblPlants:Zm00001d021127_P001 |
| EnsemblPlants:Zm00001d021127_T001 | SEG:seg | : | : | : | : |
Description
ATP-dependent RNA helicase DRS1
Coordinates
chr7:+:143327655..143344805
Molecular Weight (calculated)
86003.2 Da
IEP (calculated)
7.149
GRAVY (calculated)
-0.646
Length
770 amino acids
Sequence
(BLAST)
(BLAST)
001: MDPSFRFDPD SSDDEASGAP ARGRLAQSPW EFSLYAESVA AEHARRRTTS IDEKILHLRQ GCGKPVLSDG SESDVSGSGE DDSNEKEIEE ESGDEEDERE
101: IEGVGDEEES GDREGGEEGG SELGEEKDAH EEEDTVEQNE TSGPVDPSNF FASSEGATFH ANSFLELNLS RPLVRACEAL GYQKPTPIQA ACIPLALTGR
201: DICGSAITGS GKTAAFSLPV LERLLFRPKR VPAIRVLILT PTRELAAQVH SMIEKLAQFT DIRCCLIVGG LSTKVQEVAL RSMPDIVVAT PGRIIDHLRN
301: SLSVGLEDLA VVILDEADRL LELGFSAEIQ ELIRMCPKRR QTMLFSATMT EEIDELIKLS LNKPVRLEAD PSLKRPATLT EEVVRIRRAR ESNQEAVLLA
401: LCLKTFKRSV IIFSGTKQSA HRLKIIFGLS GMKAAELHGN LTQAQRLEAL ELFRKQEVDF LIATDVAARG IDIVGVQTVI NFACPRDVKT YLHRVGRTAR
501: AGREGYAVTF VTDDDRSLLK AIAKKAGSQL KSRIVAEKPV AECAQLIEQL EDQISIIIRE EKVEREARKA EMEIAKAENM IAHKDEIYSR PKRTWFATER
601: EKKLLVAAAK ESLGQGKSTS GIISAKQAED LRLKEKKRRE HEKDLPRKKR RRLEAQREML EDEDEDDEEA KESDRGKKLK KGQSLVDAAY RKAKSLKAAS
701: KRGPGASKGK KEKNARQYSE KTPNRHEEMR ELFQNDMSEW KQGRSSKKNN NFAHKKSKAF NSKARYKRRK
101: IEGVGDEEES GDREGGEEGG SELGEEKDAH EEEDTVEQNE TSGPVDPSNF FASSEGATFH ANSFLELNLS RPLVRACEAL GYQKPTPIQA ACIPLALTGR
201: DICGSAITGS GKTAAFSLPV LERLLFRPKR VPAIRVLILT PTRELAAQVH SMIEKLAQFT DIRCCLIVGG LSTKVQEVAL RSMPDIVVAT PGRIIDHLRN
301: SLSVGLEDLA VVILDEADRL LELGFSAEIQ ELIRMCPKRR QTMLFSATMT EEIDELIKLS LNKPVRLEAD PSLKRPATLT EEVVRIRRAR ESNQEAVLLA
401: LCLKTFKRSV IIFSGTKQSA HRLKIIFGLS GMKAAELHGN LTQAQRLEAL ELFRKQEVDF LIATDVAARG IDIVGVQTVI NFACPRDVKT YLHRVGRTAR
501: AGREGYAVTF VTDDDRSLLK AIAKKAGSQL KSRIVAEKPV AECAQLIEQL EDQISIIIRE EKVEREARKA EMEIAKAENM IAHKDEIYSR PKRTWFATER
601: EKKLLVAAAK ESLGQGKSTS GIISAKQAED LRLKEKKRRE HEKDLPRKKR RRLEAQREML EDEDEDDEEA KESDRGKKLK KGQSLVDAAY RKAKSLKAAS
701: KRGPGASKGK KEKNARQYSE KTPNRHEEMR ELFQNDMSEW KQGRSSKKNN NFAHKKSKAF NSKARYKRRK
001: MPSSFFFEDA SDDELELIRN QEDSSEEDVK EGEAEEHEAG EDEDGEEEYE EEDDDEEEED EKRKRDADAQ SPWDFASYSS SVGEEHARRH TTSIDEKISK
101: AIQHRPVPIS INEEEEEEEE EEDASDAETD KQEEYLSEDD EAAEYKPEDA TPKPFFSTVD GVSFHADTFM ELNLSRPLLR ACETLGYKKP TPIQAACIPL
201: ALTGRDLCAS AITGSGKTAA FALPTLERLL FRPKRVFATR VLILTPTREL AVQIHSMIQN LAQFTDIKCG LIVGGLSVRE QEVVLRSMPD IVVATPGRMI
301: DHLRNSMSVD LDDLAVLILD EADRLLQTGF ATEITELVRL CPKRRQTMLF SATMTEEVKE LVKLSLNKPL RLSADPSARR PPGLTEEVVR IRRTREANQE
401: AVLLSLCTRT FKSKVIIFSG TKQAAHRLKI LFGLAGLKAA ELHGNLTQAQ RLDSLELFRK QEVDFLIATD VAARGLDIIG VQTVINYACP REIDSYVHRV
501: GRTARAGREG YAVTFVTDSD RSLLKVIAKK VGSKLKSRVI PEQSIVKWSQ IIDEMEDQYS AVISAERDER ALRKAEMEFA KAENMLEHRD EIYARPKRTW
601: FMTEKEKKLV AQAEKDSAGN PAGGELVSAD RAEDLKMKEK RKREREKNLP RKKRRKLEAA REMLEDNEGE EEEEDEEGDE KRGRSRGKDK KKQETDKKGL
701: TLKDLGYMRA KAVKAKQRAI DSGKMERPKP DKKQSRSKPR NQPRGEEMKD LFKSDMGEKK QGRGGAAAAA KPRTKSKNSF KSKARYKRR
101: AIQHRPVPIS INEEEEEEEE EEDASDAETD KQEEYLSEDD EAAEYKPEDA TPKPFFSTVD GVSFHADTFM ELNLSRPLLR ACETLGYKKP TPIQAACIPL
201: ALTGRDLCAS AITGSGKTAA FALPTLERLL FRPKRVFATR VLILTPTREL AVQIHSMIQN LAQFTDIKCG LIVGGLSVRE QEVVLRSMPD IVVATPGRMI
301: DHLRNSMSVD LDDLAVLILD EADRLLQTGF ATEITELVRL CPKRRQTMLF SATMTEEVKE LVKLSLNKPL RLSADPSARR PPGLTEEVVR IRRTREANQE
401: AVLLSLCTRT FKSKVIIFSG TKQAAHRLKI LFGLAGLKAA ELHGNLTQAQ RLDSLELFRK QEVDFLIATD VAARGLDIIG VQTVINYACP REIDSYVHRV
501: GRTARAGREG YAVTFVTDSD RSLLKVIAKK VGSKLKSRVI PEQSIVKWSQ IIDEMEDQYS AVISAERDER ALRKAEMEFA KAENMLEHRD EIYARPKRTW
601: FMTEKEKKLV AQAEKDSAGN PAGGELVSAD RAEDLKMKEK RKREREKNLP RKKRRKLEAA REMLEDNEGE EEEEDEEGDE KRGRSRGKDK KKQETDKKGL
701: TLKDLGYMRA KAVKAKQRAI DSGKMERPKP DKKQSRSKPR NQPRGEEMKD LFKSDMGEKK QGRGGAAAAA KPRTKSKNSF KSKARYKRR
Arabidopsis Description
RH28DEAD-box ATP-dependent RNA helicase 28 [Source:UniProtKB/Swiss-Prot;Acc:Q9ZRZ8]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.