Factsheet for PGSC0003DMT400025551

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 1
peroxisome 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus, peroxisome
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
PTS1:	peroxisome
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc04g081580.2.1	Tomato	nucleus	98.66	98.79
VIT_18s0001g14540.t01	Wine grape	nucleus	74.63	75.96
KRH37947	Soybean	plastid	59.46	75.21
KRH37970	Soybean	cytosol	32.08	74.69
KRH46113	Soybean	nucleus	75.17	73.98
KRG98832	Soybean	nucleus	74.63	73.25
GSMUA_Achr8P12970_001	Banana	nucleus	67.11	65.27
AT4G16630.1	Thale cress	nucleus	68.19	64.39
Zm00001d021127_P001	Maize	nucleus, plasma membrane	66.17	64.03
CDY40519	Canola	nucleus	64.83	63.72
TraesCS5D01G385400.1	Wheat	nucleus	66.31	63.5
TraesCS5B01G378100.1	Wheat	nucleus	66.31	63.41
TraesCS5A01G375900.1	Wheat	nucleus	66.17	63.37
Os12t0481100-01	Rice	nucleus	67.92	63.09
KXG35997	Sorghum	nucleus	66.71	62.59
Zm00001d006113_P001	Maize	nucleus	64.97	61.34
CDY50846	Canola	nucleus	68.05	60.43
CDY53643	Canola	nucleus	67.65	59.72
HORVU5Hr1G093160.3	Barley	nucleus	66.31	59.45
Bra040743.1-P	Field mustard	nucleus	67.79	57.78
Bra038492.1-P	Field mustard	nucleus	62.82	51.54
CDY32273	Canola	nucleus	62.68	51.15
PGSC0003DMT400029241	Potato	cytosol	20.4	31.21
PGSC0003DMT400063252	Potato	nucleus	19.33	25.44
PGSC0003DMT400057606	Potato	nucleus	20.81	24.88
PGSC0003DMT400006154	Potato	nucleus	19.87	24.79
PGSC0003DMT400006153	Potato	nucleus	17.72	24.72
PGSC0003DMT400003801	Potato	nucleus	21.88	20.45
PGSC0003DMT400057202	Potato	nucleus	19.73	19.47
PGSC0003DMT400010896	Potato	cytosol, nucleus, plastid	19.73	18.24
PGSC0003DMT400000611	Potato	mitochondrion	19.6	16.76

Protein Annotations

EntrezGene:102602227	Gene3D:3.40.50.300	MapMan:35.1	ncoils:Coil	InterPro:DEAD/DEAH_box_helicase_dom	GO:GO:0000166
GO:GO:0003674	GO:GO:0003676	GO:GO:0003824	GO:GO:0004386	GO:GO:0005488	GO:GO:0005524
GO:GO:0016787	InterPro:Helicase_ATP-bd	InterPro:Helicase_C	InterPro:IPR001650	InterPro:IPR014001	InterPro:IPR014014
UniProt:M1ALL5	InterPro:P-loop_NTPase	PFAM:PF00270	PFAM:PF00271	EnsemblPlantsGene:PGSC0003DMG400009873	PGSC:PGSC0003DMG400009873
EnsemblPlants:PGSC0003DMT400025551	ScanProsite:PS00039	PFscan:PS51192	PFscan:PS51194	PFscan:PS51195	PANTHER:PTHR24031
PANTHER:PTHR24031:SF541	InterPro:RNA-helicase_DEAD-box_CS	InterPro:RNA_helicase_DEAD_Q_motif	SMART:SM00487	SMART:SM00490	SUPFAM:SSF52540
UniParc:UPI000294FC88	RefSeq:XP_006342065.1	SEG:seg	:	:	:

Description

Dead box ATP-dependent RNA helicase [Source:PGSC_GENE;Acc:PGSC0003DMG400009873]

Coordinates

chr4:+:70939035..70946336

Molecular Weight (calculated)

84145.2 Da

IEP (calculated)

8.213

GRAVY (calculated)

-0.661

Length

745 amino acids

Sequence
(BLAST)

001: MATDFSFEQP SDEEVEYEEN DDSEEEEHEV DEDNEDADPK PRTNKKPQSP WDFSSYSESV ADEHSHRRTT SIDFKISKAR QQLSAPIAKP IEEDSDSDDS
101: EPHRQEEYRP DDEDGDDDVD THVAEKKPFF ASSEGVTFHA NSFIELHISR PLLRACEALG YSKPTPIQAA CIPLALTGRD ICGSAITGSG KTAAFALPTL
201: ERLLYRPKNR PAIRVLILTP TRELAVQVHS MIGKLAQFMP DIRCCLVVGG LSTKVQEAAL RTMPDIVVAT PGRMIDHLRN SMSVDLDDLA VLILDEADRL
301: LELGFSAEIR ELVRLCPKRR QTMLFSATMT EEVDDLINLS LNKPLRLSAD PSTKRPATLT EEVVRIRRMR EGNHEAVLLA LCTKTFTSKV IVFSGTKLAA
401: HRLKIIFGLL GFKAAELHGN LTQAQRLDAL ELFRRQEVDF LIATDVAARG LDIIGVQTVI NFACPRDLTS YVHRVGRTAR AGREGYAVTF VSDNDRSLLK
501: AIVKRAGSRL KSRIVAEQSI TKWAQVIEQL EDQVSAVMQE EREEMALRKA EMEANKAENM IAHRDEIYSR PKRTWFVTEK EKKLVQKAAK ENAAAKENGS
601: ESKVMSAEHA EDLKMKEKRK REREKNLPRK KRRKLEAARE QLEDEDDLDD VKDKTKKEKS GISLVDLAYR RAKAVKAVNK AVDAGKIVRK AGNKPKPKSR
701: ASESRTEEMQ DLFQNDMSER KQRKPLHAGG KKKSSFKSKS RYKRR

Best Arabidopsis Sequence Match ( AT4G16630.1 )
(BLAST)

001: MPSSFFFEDA SDDELELIRN QEDSSEEDVK EGEAEEHEAG EDEDGEEEYE EEDDDEEEED EKRKRDADAQ SPWDFASYSS SVGEEHARRH TTSIDEKISK
101: AIQHRPVPIS INEEEEEEEE EEDASDAETD KQEEYLSEDD EAAEYKPEDA TPKPFFSTVD GVSFHADTFM ELNLSRPLLR ACETLGYKKP TPIQAACIPL
201: ALTGRDLCAS AITGSGKTAA FALPTLERLL FRPKRVFATR VLILTPTREL AVQIHSMIQN LAQFTDIKCG LIVGGLSVRE QEVVLRSMPD IVVATPGRMI
301: DHLRNSMSVD LDDLAVLILD EADRLLQTGF ATEITELVRL CPKRRQTMLF SATMTEEVKE LVKLSLNKPL RLSADPSARR PPGLTEEVVR IRRTREANQE
401: AVLLSLCTRT FKSKVIIFSG TKQAAHRLKI LFGLAGLKAA ELHGNLTQAQ RLDSLELFRK QEVDFLIATD VAARGLDIIG VQTVINYACP REIDSYVHRV
501: GRTARAGREG YAVTFVTDSD RSLLKVIAKK VGSKLKSRVI PEQSIVKWSQ IIDEMEDQYS AVISAERDER ALRKAEMEFA KAENMLEHRD EIYARPKRTW
601: FMTEKEKKLV AQAEKDSAGN PAGGELVSAD RAEDLKMKEK RKREREKNLP RKKRRKLEAA REMLEDNEGE EEEEDEEGDE KRGRSRGKDK KKQETDKKGL
701: TLKDLGYMRA KAVKAKQRAI DSGKMERPKP DKKQSRSKPR NQPRGEEMKD LFKSDMGEKK QGRGGAAAAA KPRTKSKNSF KSKARYKRR

Arabidopsis Description

RH28DEAD-box ATP-dependent RNA helicase 28 [Source:UniProtKB/Swiss-Prot;Acc:Q9ZRZ8]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.