Factsheet for PGSC0003DMT400057606

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc02g078880.2.1	Tomato	nucleus	93.9	98.48
VIT_13s0067g01900.t01	Wine grape	nucleus	74.96	78.49
KRG97683	Soybean	nucleus	73.52	77.76
AT5G05450.1	Thale cress	nucleus	65.97	69.31
Bra028757.1-P	Field mustard	nucleus	65.17	68.35
CDY04952	Canola	nucleus	65.17	68.35
CDY14112	Canola	cytosol	65.17	68.35
KRH31184	Soybean	nucleus	72.55	67.97
Bra009114.1-P	Field mustard	nucleus	64.69	67.73
CDX70149	Canola	nucleus	64.85	67.56
GSMUA_Achr8P01870_001	Banana	cytosol	66.77	63.9
AT1G71370.1	Thale cress	nucleus	55.38	61.83
Zm00001d024719_P001	Maize	nucleus	33.39	61.54
Zm00001d027279_P001	Maize	nucleus	28.09	61.4
CDX96202	Canola	cytosol	27.29	61.15
AT1G71280.1	Thale cress	nucleus	45.59	61.08
EES00264	Sorghum	nucleus, plastid	59.71	57.76
Os01t0164500-01	Rice	plastid	59.87	57.65
TraesCS3B01G116900.1	Wheat	plastid	58.59	56.77
TraesCS3A01G100100.1	Wheat	plastid	58.43	56.52
TraesCS3D01G100800.1	Wheat	plastid	58.27	56.45
HORVU3Hr1G018130.7	Barley	plastid	58.43	53.77
Zm00001d041799_P001	Maize	cytosol	22.47	53.03
Zm00001d039746_P001	Maize	nucleus	59.39	51.03
Zm00001d002007_P002	Maize	cytosol, mitochondrion, plastid	25.52	43.92
PGSC0003DMT400029241	Potato	cytosol	21.51	27.52
PGSC0003DMT400063252	Potato	nucleus	24.4	26.86
PGSC0003DMT400006154	Potato	nucleus	22.47	23.45
PGSC0003DMT400006153	Potato	nucleus	20.06	23.41
PGSC0003DMT400025551	Potato	nucleus	24.88	20.81
PGSC0003DMT400057202	Potato	nucleus	24.88	20.53
PGSC0003DMT400010896	Potato	cytosol, nucleus, plastid	22.15	17.12
PGSC0003DMT400003801	Potato	nucleus	20.87	16.31
PGSC0003DMT400000611	Potato	mitochondrion	21.99	15.73

Protein Annotations

EntrezGene:102582063	Gene3D:3.40.50.300	MapMan:35.1	ncoils:Coil	InterPro:DEAD/DEAH_box_helicase_dom	InterPro:DUF4217
GO:GO:0000166	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0003824	GO:GO:0004386
GO:GO:0005488	GO:GO:0005524	GO:GO:0016787	InterPro:Helicase_ATP-bd	InterPro:Helicase_C	InterPro:IPR001650
InterPro:IPR014001	InterPro:IPR014014	UniProt:M1C1C7	InterPro:P-loop_NTPase	PFAM:PF00270	PFAM:PF00271
PFAM:PF13959	EnsemblPlantsGene:PGSC0003DMG400022369	PGSC:PGSC0003DMG400022369	EnsemblPlants:PGSC0003DMT400057606	ScanProsite:PS00039	PFscan:PS51192
PFscan:PS51194	PFscan:PS51195	PANTHER:PTHR24031	PANTHER:PTHR24031:SF2	InterPro:RNA-helicase_DEAD-box_CS	InterPro:RNA_helicase_DEAD_Q_motif
SMART:SM00487	SMART:SM00490	SMART:SM01178	SUPFAM:SSF52540	UniParc:UPI000296B073	SEG:seg

Description

Dead box ATP-dependent RNA helicase [Source:PGSC_GENE;Acc:PGSC0003DMG400022369]

Coordinates

chr2:-:34541652..34549035

Molecular Weight (calculated)

69566.2 Da

IEP (calculated)

8.746

GRAVY (calculated)

-0.261

Length

623 amino acids

Sequence
(BLAST)

001: MASTNQNKAL TNTRFSDLEP RLAEPVLEAL TNSGFEFCTP VQAATIPLLC SYKDVTVDAA TGSGKTLAFV LPVVEIIRRS SSNPKPHKGV SGLEYFQLKG
101: SSVYQFELDS AVVASWEVMG IIISPTRELS SQIFHVAQPF ISTLANVRPM LLVGGLEVKA DIKKIEEEGA NLLIGTPGRL YDIMERMDIL DFRDLEILIL
201: DEADRLLGMG FEKQLNSIIC RLPKLRRTGL FSATQTEAVE ELSKAGLRNP VRVEVRAEAK QLSGSASGNS TSSKTPSGLH IEYLECEADK KSSQLVHLIT
301: KNKSKKIIVY FMTCACVDYW GTILPRLSCL KSFSLISLHG RMKQSAREKA LASFTALSTG VLLCTDVAAR GLDIAGVDYI IQYDLPQDDK MFIHRVGRTA
401: RLGRQGSAVV FLLPKEEAYV EFLRIKDVFL EEGECASDAP DIIDEIRSAA KKDRDVMEKG LRAFVSYIRA YKEHHCSYIL RWKELEIGKL GMGYGLLQLP
501: SVPDVKHHSL STKGFTAVED INLDEIKFKD KSREKQRKKN LQVKKAAMAQ QQEQKTQRLK KEANSTATAS RKRTAKQRRA TQLVEDEDEI TREYRLLKKL
601: KKGAIDENEF AKLTGTEDLL SDI

Best Arabidopsis Sequence Match ( AT5G05450.1 )
(BLAST)

001: MDSSANINKA LTETRFSDLE PPLSGDIIEA LNQSDFEFCT PVQAATIPLL CSYKDVAVDA ATGSGKTLAF VVPLVEILRR STSFPPKPHQ VMGVIISPTR
101: ELSTQIYNVA QPFVSTLANV NSVLLVGGRE VKADMKIIEE EGCNVLIGTP GRLSDIMERM EILDFRNLEI LILDEADRLL EMGFQRQVNY IISRLPKQRR
201: TGLFSATQTE GVEELAKAGL RNPVRVEVRA KSKSESSQQL TNSKTPSGLH LEYMECEADK KSSQLVDLLI KNSDKKLIVF FMTCASVDYW GLVLSKIPAL
301: KSISLIPIHG DMKQNARDKA LASFTKASSG ALLCTDVAAR GLDIPGIDYV VQYDPPQDPN MFNHRAGRTA RLGRQGRAIV FLLPKEEAYV EFMRIRRVPL
401: EERKCSEDAS DVIPIIRSAA MKDRAVMEKG LKAFVSFVRA YKEHHCSFIF RWKDLEIGKL AMGYGLLYLP SMSEVKQHRL SSEGFTPVEG VKFEEIKFKD
501: KYREKQRQQN LQVRKEKRQE EKKEKGKRKR VDASASNDPK KASRKLTGKQ RQTIQTAEDE EVMDRDYKLM IKVKKGLIKE DEYERLTGDD DLF

Arabidopsis Description

RH18DEAD-box ATP-dependent RNA helicase 18 [Source:UniProtKB/Swiss-Prot;Acc:Q9FLB0]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.