Factsheet for AT5G05450.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra028757.1-P	Field mustard	nucleus	86.51	86.36
CDY04952	Canola	nucleus	86.17	86.03
CDY14112	Canola	cytosol	86.0	85.86
CDX70149	Canola	nucleus	83.64	82.94
Bra009114.1-P	Field mustard	nucleus	82.8	82.52
AT1G71370.1	Thale cress	nucleus	70.15	74.55
AT1G71280.1	Thale cress	nucleus	57.0	72.69
VIT_13s0067g01900.t01	Wine grape	nucleus	72.34	72.1
KRG97683	Soybean	nucleus	70.49	70.97
Solyc02g078880.2.1	Tomato	nucleus	69.48	69.36
PGSC0003DMT400057606	Potato	nucleus	69.31	65.97
KRH31184	Soybean	nucleus	69.31	61.8
Zm00001d027279_P001	Maize	nucleus	29.17	60.7
Zm00001d024719_P001	Maize	nucleus	33.9	59.47
GSMUA_Achr8P01870_001	Banana	cytosol	64.92	59.14
TraesCS3B01G116900.1	Wheat	plastid	62.9	58.01
Os01t0164500-01	Rice	plastid	63.07	57.81
TraesCS3A01G100100.1	Wheat	plastid	62.73	57.76
TraesCS3D01G100800.1	Wheat	plastid	62.56	57.7
EES00264	Sorghum	nucleus, plastid	62.06	57.14
HORVU3Hr1G018130.7	Barley	plastid	63.07	55.24
Zm00001d041799_P001	Maize	cytosol	23.78	53.41
Zm00001d039746_P001	Maize	nucleus	61.55	50.34
Zm00001d002007_P002	Maize	cytosol, mitochondrion, plastid	25.8	42.27
AT5G60990.1	Thale cress	nucleus	22.43	29.17
AT3G18600.1	Thale cress	nucleus	25.97	27.11
AT1G16280.1	Thale cress	nucleus	20.91	25.25
AT5G65900.1	Thale cress	nucleus	25.97	24.33
AT5G08620.1	Thale cress	nucleus	22.77	23.98
AT2G40700.1	Thale cress	nucleus	23.1	22.46
AT5G54910.1	Thale cress	nucleus	25.3	20.3
AT5G63630.2	Thale cress	mitochondrion, plastid	22.93	18.99
AT4G16630.1	Thale cress	nucleus	23.27	17.49
AT1G63250.1	Thale cress	mitochondrion	21.92	16.29
AT5G08610.1	Thale cress	mitochondrion, plastid	23.27	16.24
AT1G77030.1	Thale cress	nucleus	22.77	15.98
AT3G16840.2	Thale cress	nucleus	21.25	15.24
AT2G07750.1	Thale cress	plastid	21.59	15.15

Protein Annotations

Gene3D:3.40.50.300	MapMan:35.1	EntrezGene:830428	UniProt:A0A178UTE0	ProteinID:AED90875.1	EMBL:AJ010469
ArrayExpress:AT5G05450	EnsemblPlantsGene:AT5G05450	RefSeq:AT5G05450	TAIR:AT5G05450	RefSeq:AT5G05450-TAIR-G	EnsemblPlants:AT5G05450.1
TAIR:AT5G05450.1	ProteinID:BAB09988.1	ncoils:Coil	InterPro:DEAD/DEAH_box_helicase_dom	InterPro:DUF4217	GO:GO:0000166
GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0003824	GO:GO:0004004	GO:GO:0004386
GO:GO:0005488	GO:GO:0005524	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0005730	GO:GO:0005737	GO:GO:0006139	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987
GO:GO:0010501	GO:GO:0016787	InterPro:Helicase_ATP-bd	InterPro:Helicase_C	InterPro:IPR001650	InterPro:IPR014001
InterPro:IPR014014	RefSeq:NP_196164.1	ProteinID:OAO96011.1	InterPro:P-loop_NTPase	PFAM:PF00270	PFAM:PF00271
PFAM:PF13959	PO:PO:0000013	PO:PO:0000037	PO:PO:0000230	PO:PO:0000293	PO:PO:0001054
PO:PO:0001078	PO:PO:0001081	PO:PO:0001185	PO:PO:0004507	PO:PO:0007064	PO:PO:0007095
PO:PO:0007098	PO:PO:0007103	PO:PO:0007115	PO:PO:0007123	PO:PO:0007611	PO:PO:0007616
PO:PO:0008019	PO:PO:0009005	PO:PO:0009006	PO:PO:0009009	PO:PO:0009010	PO:PO:0009025
PO:PO:0009029	PO:PO:0009030	PO:PO:0009031	PO:PO:0009032	PO:PO:0009046	PO:PO:0009047
PO:PO:0009052	PO:PO:0020030	PO:PO:0020038	PO:PO:0020100	PO:PO:0020137	PO:PO:0025022
ScanProsite:PS00039	PFscan:PS51192	PFscan:PS51194	PFscan:PS51195	PANTHER:PTHR24031	PANTHER:PTHR24031:SF2
UniProt:Q9FLB0	InterPro:RNA-helicase_DEAD-box_CS	InterPro:RNA_helicase_DEAD_Q_motif	SMART:SM00487	SMART:SM00490	SMART:SM01178
SUPFAM:SSF52540	UniParc:UPI00000A6CDB	SEG:seg	:	:	:

Description

RH18DEAD-box ATP-dependent RNA helicase 18 [Source:UniProtKB/Swiss-Prot;Acc:Q9FLB0]

Coordinates

chr5:+:1611737..1615387

Molecular Weight (calculated)

66943.0 Da

IEP (calculated)

9.049

GRAVY (calculated)

-0.397

Length

593 amino acids

Sequence
(BLAST)

001: MDSSANINKA LTETRFSDLE PPLSGDIIEA LNQSDFEFCT PVQAATIPLL CSYKDVAVDA ATGSGKTLAF VVPLVEILRR STSFPPKPHQ VMGVIISPTR
101: ELSTQIYNVA QPFVSTLANV NSVLLVGGRE VKADMKIIEE EGCNVLIGTP GRLSDIMERM EILDFRNLEI LILDEADRLL EMGFQRQVNY IISRLPKQRR
201: TGLFSATQTE GVEELAKAGL RNPVRVEVRA KSKSESSQQL TNSKTPSGLH LEYMECEADK KSSQLVDLLI KNSDKKLIVF FMTCASVDYW GLVLSKIPAL
301: KSISLIPIHG DMKQNARDKA LASFTKASSG ALLCTDVAAR GLDIPGIDYV VQYDPPQDPN MFNHRAGRTA RLGRQGRAIV FLLPKEEAYV EFMRIRRVPL
401: EERKCSEDAS DVIPIIRSAA MKDRAVMEKG LKAFVSFVRA YKEHHCSFIF RWKDLEIGKL AMGYGLLYLP SMSEVKQHRL SSEGFTPVEG VKFEEIKFKD
501: KYREKQRQQN LQVRKEKRQE EKKEKGKRKR VDASASNDPK KASRKLTGKQ RQTIQTAEDE EVMDRDYKLM IKVKKGLIKE DEYERLTGDD DLF

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.