Factsheet for AT5G08620.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra009356.1-P	Field mustard	cytosol	87.57	87.88
CDY40740	Canola	cytosol	77.62	80.78
Bra028652.1-P	Field mustard	nucleus	77.44	80.59
CDY44780	Canola	mitochondrion	77.44	75.43
Os01t0618500-01	Rice	nucleus	58.08	61.01
HORVU3Hr1G054730.1	Barley	cytosol, mitochondrion, nucleus, plastid	57.9	60.59
TraesCS3A01G222500.1	Wheat	nucleus, plastid	57.02	59.67
TraesCS3D01G230300.1	Wheat	nucleus	56.66	59.29
TraesCS3B01G252700.2	Wheat	nucleus	49.56	58.49
EES03287	Sorghum	cytosol	57.9	58.11
Zm00001d044203_P001	Maize	plasma membrane	56.13	56.43
AT5G63630.2	Thale cress	mitochondrion, plastid	71.76	56.42
Zm00001d044208_P001	Maize	plastid	58.61	56.31
EES01082	Sorghum	mitochondrion, plastid	58.61	56.12
Os01t0618400-01	Rice	nucleus, plasma membrane	58.61	55.56
TraesCS3B01G252600.1	Wheat	plastid	57.37	55.21
TraesCS3D01G230400.2	Wheat	mitochondrion	57.55	55.1
TraesCS3A01G222700.1	Wheat	mitochondrion	57.37	54.93
AT5G08610.1	Thale cress	mitochondrion, plastid	81.71	54.12
OQU76491	Sorghum	nucleus	61.46	52.74
KRH47920	Soybean	nucleus	65.19	52.2
VIT_15s0046g01010.t01	Wine grape	plastid	67.14	49.15
GSMUA_Achr8P04210_001	Banana	cytosol	61.46	46.76
GSMUA_Achr10P...	Banana	mitochondrion	62.52	46.5
KRH06491	Soybean	nucleus	65.54	45.78
Solyc01g095740.2.1	Tomato	nucleus	65.54	42.41
PGSC0003DMT400000611	Potato	mitochondrion	65.01	42.02
Zm00001d046097_P001	Maize	mitochondrion	61.63	37.07
TraesCS7D01G328100.1	Wheat	mitochondrion	61.46	36.08
TraesCS7A01G350700.1	Wheat	mitochondrion	61.63	35.85
Os06t0526600-01	Rice	mitochondrion	58.61	35.75
TraesCS7B01G232200.1	Wheat	mitochondrion	61.28	35.6
AT1G63250.1	Thale cress	mitochondrion	48.49	34.21
AT2G07750.1	Thale cress	plastid	47.96	31.95
AT5G60990.1	Thale cress	nucleus	22.74	28.07
AT3G18600.1	Thale cress	nucleus	26.47	26.23
AT1G16280.1	Thale cress	nucleus	22.2	25.46
AT5G65900.1	Thale cress	nucleus	27.35	24.33
AT1G71370.1	Thale cress	nucleus	23.45	23.66
AT5G05450.1	Thale cress	nucleus	23.98	22.77
AT2G40700.1	Thale cress	nucleus	24.33	22.46
AT1G71280.1	Thale cress	nucleus	18.29	22.15
AT5G54910.1	Thale cress	nucleus	26.11	19.89
AT4G16630.1	Thale cress	nucleus	25.04	17.87
AT3G16840.2	Thale cress	nucleus	23.62	16.08
AT1G77030.1	Thale cress	nucleus	20.96	13.96

Protein Annotations

Gene3D:3.40.50.300	MapMan:35.1	EntrezGene:830763	UniProt:A0A178U7J5	ProteinID:AED91330.1	EMBL:AJ010473
ArrayExpress:AT5G08620	EnsemblPlantsGene:AT5G08620	RefSeq:AT5G08620	TAIR:AT5G08620	RefSeq:AT5G08620-TAIR-G	EnsemblPlants:AT5G08620.1
TAIR:AT5G08620.1	EMBL:AY035114	EMBL:AY142638	Unigene:At.47465	ProteinID:BAB10011.1	InterPro:DEAD/DEAH_box_helicase_dom
GO:GO:0000166	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0003824	GO:GO:0004004
GO:GO:0004386	GO:GO:0005488	GO:GO:0005524	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0005730	GO:GO:0005737	GO:GO:0006139	GO:GO:0006950	GO:GO:0008150
GO:GO:0008152	GO:GO:0009409	GO:GO:0009414	GO:GO:0009628	GO:GO:0009651	GO:GO:0009987
GO:GO:0010501	GO:GO:0016787	InterPro:Helicase_ATP-bd	InterPro:Helicase_C	InterPro:IPR001650	InterPro:IPR014001
InterPro:IPR014014	RefSeq:NP_196479.1	ProteinID:OAO89609.1	InterPro:P-loop_NTPase	PFAM:PF00270	PFAM:PF00271
PO:PO:0000013	PO:PO:0000037	PO:PO:0000084	PO:PO:0000230	PO:PO:0000293	PO:PO:0001054
PO:PO:0001078	PO:PO:0001081	PO:PO:0001185	PO:PO:0004507	PO:PO:0007064	PO:PO:0007095
PO:PO:0007098	PO:PO:0007103	PO:PO:0007115	PO:PO:0007123	PO:PO:0007611	PO:PO:0007616
PO:PO:0008019	PO:PO:0009005	PO:PO:0009006	PO:PO:0009009	PO:PO:0009010	PO:PO:0009025
PO:PO:0009029	PO:PO:0009030	PO:PO:0009031	PO:PO:0009032	PO:PO:0009046	PO:PO:0009047
PO:PO:0009052	PO:PO:0020030	PO:PO:0020038	PO:PO:0020100	PO:PO:0020137	PO:PO:0025022
PO:PO:0025281	PFscan:PS51192	PFscan:PS51194	PFscan:PS51195	PANTHER:PTHR24031	PANTHER:PTHR24031:SF528
UniProt:Q94C75	InterPro:RNA_helicase_DEAD_Q_motif	SMART:SM00487	SMART:SM00490	SUPFAM:SSF52540	Symbol:STRS2
UniParc:UPI00000AC417	SEG:seg	:	:	:	:

Description

RH25DEAD-box ATP-dependent RNA helicase 25 [Source:UniProtKB/Swiss-Prot;Acc:Q94C75]

Coordinates

chr5:+:2794388..2797760

Molecular Weight (calculated)

62498.4 Da

IEP (calculated)

10.432

GRAVY (calculated)

-0.301

Length

563 amino acids

Sequence
(BLAST)

001: MNSDGPKSGK KRREIRAKLV KKLTSDEDGS GKLVKDNNKS LKRGREGKSD VDEPLIKKPA STTPLVTQIA KTSDSYLSKT RFDQFPLSPL TLKGIEDAGF
101: KTMTVVQEAT LPLILQGKDI LAKAKTGTGK TVAFLLPSIE AVIKAPPASR DNRHPPIIVL VVCPTRELAC QAAAEANILL KYHPSIGVQV VIGGTKLPTE
201: QRRLQKSPCQ ILVATPGRLK DHIDNTSGFA TRLMGVKVLV LDEADHLLDM GFRREIERII AAVPKQRQTF LFSATVSDEV RQICHVALKR DHEFVNCVQE
301: GAGETHQKVS QMYMIASLDR HFSLLYGLLK KHITDNVGYK VIIFCTTAMV TRLVADLLGK LSLNVREIHS RKPQSYRTRV SDEFRKSKSI ILVTSDVSAR
401: GVDYPDVSLV VQMGLPSDRE QYIHRLGRTG RKGKEGEGVL LLAPWEEYFL SSVKDLPITK SSLPPIDHEA VKKVQKGLIQ VEMTNKEAAY QAWLGYYKSQ
501: KKIARDTTRL VELANEFSRS MGLSIPPAIP VNILGKMGLK NVPGIRVAPG FDKKPAKRNY RSR

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.