CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, plastid

Predictor Summary:

extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1
plastid 3
mitochondrion 5
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	mitochondrion, plastid
Any Predictor:	mitochondrion, nucleus, plastid, secretory
BaCelLo:	secretory
ChloroP:	plastid
iPSORT:	mitochondrion
MultiLoc:	mitochondrion
Plant-mPloc:	nucleus
Predotar:	plastid
PProwler:	mitochondrion
TargetP:	mitochondrion
WoLF PSORT:	plastid
YLoc:	mitochondrion

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d044208_P001	Maize	plastid	95.75	96.08
Os01t0618400-01	Rice	nucleus, plasma membrane	83.16	82.32
TraesCS3D01G230400.2	Wheat	mitochondrion	79.25	79.25
TraesCS3A01G222700.1	Wheat	mitochondrion	79.25	79.25
TraesCS3B01G252600.1	Wheat	plastid	78.23	78.63
EES03287	Sorghum	cytosol	74.66	78.25
Bra009356.1-P	Field mustard	cytosol	57.14	59.89
Bra028652.1-P	Field mustard	nucleus	54.93	59.7
CDY40740	Canola	cytosol	54.59	59.33
AT5G08620.1	Thale cress	nucleus	56.12	58.61
CDY44780	Canola	mitochondrion	55.78	56.75
GSMUA_Achr8P04210_001	Banana	cytosol	67.18	53.38
OQU76491	Sorghum	nucleus	59.35	53.2
KRH47920	Soybean	nucleus	62.07	51.92
AT5G63630.2	Thale cress	mitochondrion, plastid	61.56	50.56
CDX84428	Canola	mitochondrion	60.2	50.07
CDY41525	Canola	mitochondrion	60.54	50.07
VIT_15s0046g01010.t01	Wine grape	plastid	63.44	48.5
Bra038650.1-P	Field mustard	mitochondrion	60.54	47.91
Bra009355.1-P	Field mustard	mitochondrion, plastid	61.56	47.51
KRH06491	Soybean	nucleus	62.07	45.29
AT5G08610.1	Thale cress	mitochondrion, plastid	62.93	43.53
Solyc01g095740.2.1	Tomato	nucleus	60.71	41.03
PGSC0003DMT400000611	Potato	mitochondrion	60.03	40.53
EES07789	Sorghum	mitochondrion	48.98	34.99
OQU93356	Sorghum	cytosol	22.62	29.3
KXG37786	Sorghum	nucleus	22.45	29.14
KXG22990	Sorghum	cytosol	21.77	28.76
CDY21554	Canola	mitochondrion	61.05	26.42
CDX69935	Canola	mitochondrion	61.39	26.18
OQU76528	Sorghum	nucleus	26.53	26.04
EER90714	Sorghum	nucleus	26.87	25.36
EER99761	Sorghum	cytosol	21.09	24.7
EES18259	Sorghum	nucleus	23.13	22.67
EES00264	Sorghum	nucleus, plastid	23.98	21.89
EER99450	Sorghum	nucleus	23.81	18.79
KXG35997	Sorghum	nucleus	24.15	17.88
OQU81941	Sorghum	nucleus	24.15	16.86
OQU80427	Sorghum	nucleus	22.11	15.24

Protein Annotations

Gene3D:3.40.50.300	MapMan:35.1	EntrezGene:8054392	UniProt:C5XR34	InterPro:DEAD/DEAH_box_helicase_dom	EnsemblPlants:EES01082
ProteinID:EES01082	ProteinID:EES01082.1	GO:GO:0000166	GO:GO:0003674	GO:GO:0003676	GO:GO:0003824
GO:GO:0004004	GO:GO:0004386	GO:GO:0005488	GO:GO:0005524	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0005730	GO:GO:0005737	GO:GO:0006139	GO:GO:0008150
GO:GO:0008152	GO:GO:0009987	GO:GO:0010501	GO:GO:0016787	InterPro:Helicase_ATP-bd	InterPro:Helicase_C
InterPro:IPR001650	InterPro:IPR014001	InterPro:IPR014014	InterPro:P-loop_NTPase	PFAM:PF00270	PFAM:PF00271
ScanProsite:PS00039	PFscan:PS51192	PFscan:PS51194	PFscan:PS51195	PANTHER:PTHR24031	PANTHER:PTHR24031:SF275
InterPro:RNA-helicase_DEAD-box_CS	InterPro:RNA_helicase_DEAD_Q_motif	SMART:SM00487	SMART:SM00490	EnsemblPlantsGene:SORBI_3003G222600	SUPFAM:SSF52540
UniParc:UPI0001A84A8D	RefSeq:XP_002455962.1	SEG:seg	:	:	:

Description

hypothetical protein

Coordinates

chr3:+:55866729..55870422

Molecular Weight (calculated)

64788.6 Da

IEP (calculated)

9.893

GRAVY (calculated)

-0.236

Length

588 amino acids

Sequence
(BLAST)

001: MASGDLLLLR AHAGAPVLAR AFAGRLLVPA RRRCGLVSPL AAASKVGIAD VVGVGRRVRP GGADQKRRRR DAEEGFGFSG VATRRELVDD EEDEEDEALK
101: LGVEKNGGET GGVDGSYLSE TRFDQCAISP LSLKAVKDAG YERMTEVQAA TLPIILQGKD VLAKAKTGTG KTVAFLLPAI EVLSTLPRER NQLRPPINLL
201: VMCPTRELAN QVAVEARKLL RYHRSLGVQV VIGGTRLTQE QRSMQANPCQ ILVATPGRLK DHLENTPGFS SRLKGVKVLV LDEADRLLDM GFRRDIEKII
301: ASIPRERQTL LFSATVPEEV RQISHVAMKK DYRFVNTVKE GDEETHAQVS QMYMVAPLDL HFSILYDVLK KHVAEDADYK VIIFCTTAMV TKLVAEVLSQ
401: LKLNIREIHS RKSQSARTKV SDEFRKSKGL ILVSSDVSAR GVDYPDVTLV IQVGIPADRE QYIHRLGRTG RKGKEGQGLL LLAPWEKYFL GTVKDLSIAE
501: SAVPPVDSSV ETEVKNAVRK VEMKSKECAY QAWLGYYNSN KTIGRDKSRL AHLAEEFSQS MGLAVPPAIP RNILRKMGLN NVPGLRSS

Best Arabidopsis Sequence Match ( AT5G08610.1 )
(BLAST)

001: MSSKFPLGVR FITHSLPCTR LASMNSGALI YSFRSVPVLS KAFPFRLKYI GLGSRVNFST RPERSQPEFA RRSGAGGEIR ASKSLIEDEA ELSDWVSDLR
101: TSSLRGKFTS DEDNADPEVV RRNVDRDTSR GPRRGREGQS DRFGGAKRGK EGEMDRFGSP NRRRTSGEPA DSFGNKRLGD REGSRNGRVQ GKSSESSFRG
201: RSDRNVDSGS SFRGRSDKNV DSGSSFRGRN DRNVDSGSSF RGRSDRNVDS GSSFRGRSDR NVDSGSSFRG RNDRNVDSGS SFRGRNDRNV ESGFRREPGS
301: ENNRGLGKQT RGLSLEEEDS SDDDENRVGL GNIDDLPSED SSDEDDENDE PLIKKAASAK AVQTDKPTGE HVKTSDSYLS KTRFDQFPLS PLSLKAIKDA
401: GFETMTVVQE ATLPIILQGK DVLAKAKTGT GKTVAFLLPA IEAVIKSPPA SRDSRQPPII VLVVCPTREL ASQAAAEANT LLKYHPSIGV QVVIGGTKLP
501: TEQRRMQTNP CQILVATPGR LKDHIENTSG FATRLMGVKV LVLDEADHLL DMGFRRDIER IIAAVPKQRQ TFLFSATVPE EVRQICHVAL KRDHEFINCV
601: QEGSGETHQK VTQMYMIASL DRHFSLLHVL LKEHIADNVD YKVIIFCTTA MVTRLVADLL SQLSLNVREI HSRKPQSYRT RVSDEFRKSK AIILVTSDVS
701: ARGVDYPDVS LVVQMGLPSD REQYIHRLGR TGRKGKEGEG VLLLAPWEEY FMSSVKDLPI TKSPLPPIDP EAVKRVQKGL SQVEMKNKEA AYQAWLGYYK
801: SQKMIARDTT RLVELANEFS RSMGLDSPPA IPKNVLGKMG LKNVPGLRTK

Arabidopsis Description

RH26PDE340 [Source:UniProtKB/TrEMBL;Acc:A0A178UFQ6]
SUBAcon: [mitochondrion,plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.