Factsheet for Bra009356.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
AT5G08620.1	Thale cress	nucleus	87.88	87.57
Bra028652.1-P	Field mustard	nucleus	79.68	82.62
Os01t0618500-01	Rice	nucleus	59.18	61.94
HORVU3Hr1G054730.1	Barley	cytosol, mitochondrion, nucleus, plastid	58.65	61.15
TraesCS3A01G222500.1	Wheat	nucleus, plastid	57.93	60.41
Bra009355.1-P	Field mustard	mitochondrion, plastid	82.0	60.37
TraesCS3D01G230300.1	Wheat	nucleus	57.58	60.04
TraesCS3B01G252700.2	Wheat	nucleus	50.8	59.75
EES03287	Sorghum	cytosol	58.65	58.65
Zm00001d044208_P001	Maize	plastid	59.89	57.34
EES01082	Sorghum	mitochondrion, plastid	59.89	57.14
Zm00001d044203_P001	Maize	plasma membrane	56.86	56.96
Os01t0618400-01	Rice	nucleus, plasma membrane	59.71	56.4
TraesCS3B01G252600.1	Wheat	plastid	58.11	55.73
TraesCS3D01G230400.2	Wheat	mitochondrion	58.29	55.61
TraesCS3A01G222700.1	Wheat	mitochondrion	58.11	55.44
KRH47920	Soybean	nucleus	67.2	53.63
OQU76491	Sorghum	nucleus	62.39	53.35
Bra038650.1-P	Field mustard	mitochondrion	70.41	53.16
VIT_15s0046g01010.t01	Wine grape	plastid	68.98	50.33
GSMUA_Achr8P04210_001	Banana	cytosol	62.03	47.03
KRH06491	Soybean	nucleus	67.38	46.9
GSMUA_Achr10P...	Banana	mitochondrion	62.75	46.5
Solyc01g095740.2.1	Tomato	nucleus	67.74	43.68
PGSC0003DMT400000611	Potato	mitochondrion	67.02	43.17
Zm00001d046097_P001	Maize	mitochondrion	62.57	37.5
Os06t0526600-01	Rice	mitochondrion	59.0	35.86
TraesCS7D01G328100.1	Wheat	mitochondrion	60.96	35.66
TraesCS7A01G350700.1	Wheat	mitochondrion	61.14	35.43
TraesCS7B01G232200.1	Wheat	mitochondrion	60.96	35.29
Bra027808.1-P	Field mustard	mitochondrion	47.77	34.31
Bra029342.1-P	Field mustard	cytosol	22.64	28.1
Bra022336.1-P	Field mustard	nucleus	26.56	26.23
Bra037574.1-P	Field mustard	nucleus	26.38	26.15
Bra024428.1-P	Field mustard	nucleus	26.92	25.55
Bra001713.1-P	Field mustard	nucleus	26.56	24.59
Bra026724.1-P	Field mustard	nucleus	21.21	24.49
Bra004584.1-P	Field mustard	nucleus	25.31	23.13
Bra009114.1-P	Field mustard	nucleus	23.89	22.52
Bra028757.1-P	Field mustard	nucleus	23.53	22.22
Bra021205.1-P	Field mustard	mitochondrion, nucleus, plastid	22.64	20.19
Bra002946.1-P	Field mustard	nucleus	25.13	18.95
Bra040743.1-P	Field mustard	nucleus	24.96	16.02
Bra003691.1-P	Field mustard	cytosol	21.93	14.44
Bra038492.1-P	Field mustard	nucleus	21.57	13.33

Protein Annotations

Gene3D:3.40.50.300	MapMan:35.1	EnsemblPlantsGene:Bra009356	EnsemblPlants:Bra009356.1	EnsemblPlants:Bra009356.1-P	InterPro:DEAD/DEAH_box_helicase_dom
GO:GO:0000166	GO:GO:0003674	GO:GO:0003676	GO:GO:0005488	GO:GO:0005524	InterPro:Helicase_ATP-bd
InterPro:Helicase_C	InterPro:IPR001650	InterPro:IPR014001	InterPro:IPR014014	UniProt:M4CYQ9	InterPro:P-loop_NTPase
PFAM:PF00270	PFAM:PF00271	PFscan:PS51192	PFscan:PS51194	PFscan:PS51195	PANTHER:PTHR24031
PANTHER:PTHR24031:SF528	InterPro:RNA_helicase_DEAD_Q_motif	SMART:SM00487	SMART:SM00490	SUPFAM:SSF52540	UniParc:UPI0002543B71
SEG:seg	:	:	:	:	:

Description

AT5G08620 (E=6e-275) STRS2, ATRH25 | STRS2 (STRESS RESPONSE SUPPRESSOR 2); ATP-dependent helicase/ RNA binding

Coordinates

chrA10:+:16318965..16321787

Molecular Weight (calculated)

62199.8 Da

IEP (calculated)

10.253

GRAVY (calculated)

-0.325

Length

561 amino acids

Sequence
(BLAST)

001: MTSDGPKSGK KRREIRAKLA KELASGEDES GNKRGPKRGR EDKPADVDEP LIKKAASTIA VEAADSKPKT TDSYLSKTRF DQFPLSPLSL KGIQDAGFKT
101: MTVVQEATLP IILKGKDVLA KAKTGTGKTV AFLLPSIEAV IKSPPVSRDN RHPPIIVLVV CPTRELACQA AAEANILLKY HSSIGVEVVI GGTKLPAEQR
201: RMQKHPCQIL VATPGRLIDH IDNTSGFATR LKGVKVLVLD EADHLLDMGF RRDIERIIAA VPKQRQTFLF SATVPEEVRQ ICHIALKQDH EFVNCVQEGS
301: GETHQKVSQM YMIATLDRHF SLIYALLKKH IADNVGYKVI IFCTTAMVTR LVADLLGQLS LNVREIHSRK PQSYRTRVSD EFRKSKSIIL VTSDVSARGV
401: DYPDVSLVVQ MGLPSDREQY IHRLGRTGRK GKEGEGVLLL APWEEYFLSS VKDLPIAKSP LPPIDHEAVK KVQKALSQVE MTHKEAAYQA WLGYYKSQKK
501: IARDTTRLVE LANEFSRSMG LDTPPAIPIN VIGKMGLKNV PGLRVAPGFD KRQGKKNYRS R

Best Arabidopsis Sequence Match ( AT5G08620.1 )
(BLAST)

001: MNSDGPKSGK KRREIRAKLV KKLTSDEDGS GKLVKDNNKS LKRGREGKSD VDEPLIKKPA STTPLVTQIA KTSDSYLSKT RFDQFPLSPL TLKGIEDAGF
101: KTMTVVQEAT LPLILQGKDI LAKAKTGTGK TVAFLLPSIE AVIKAPPASR DNRHPPIIVL VVCPTRELAC QAAAEANILL KYHPSIGVQV VIGGTKLPTE
201: QRRLQKSPCQ ILVATPGRLK DHIDNTSGFA TRLMGVKVLV LDEADHLLDM GFRREIERII AAVPKQRQTF LFSATVSDEV RQICHVALKR DHEFVNCVQE
301: GAGETHQKVS QMYMIASLDR HFSLLYGLLK KHITDNVGYK VIIFCTTAMV TRLVADLLGK LSLNVREIHS RKPQSYRTRV SDEFRKSKSI ILVTSDVSAR
401: GVDYPDVSLV VQMGLPSDRE QYIHRLGRTG RKGKEGEGVL LLAPWEEYFL SSVKDLPITK SSLPPIDHEA VKKVQKGLIQ VEMTNKEAAY QAWLGYYKSQ
501: KKIARDTTRL VELANEFSRS MGLSIPPAIP VNILGKMGLK NVPGIRVAPG FDKKPAKRNY RSR

Arabidopsis Description

RH25DEAD-box ATP-dependent RNA helicase 25 [Source:UniProtKB/Swiss-Prot;Acc:Q94C75]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.