Factsheet for Bra024428.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY08740	Canola	nucleus	100.0	99.49
CDY36514	Canola	nucleus	96.45	97.77
AT5G65900.1	Thale cress	nucleus	81.39	75.99
GSMUA_Achr10P...	Banana	cytosol	54.82	62.67
VIT_17s0000g04310.t01	Wine grape	cytosol	58.04	62.36
PGSC0003DMT400063252	Potato	nucleus	59.05	61.66
KRH62970	Soybean	nucleus	56.35	61.44
Bra037574.1-P	Field mustard	nucleus	58.38	60.95
Bra022336.1-P	Field mustard	nucleus	58.54	60.92
Solyc03g114370.2.1	Tomato	nucleus	57.7	60.25
KRH56711	Soybean	nucleus	58.21	60.14
KRH03838	Soybean	nucleus	58.38	60.0
KRH54795	Soybean	nucleus	55.5	59.96
Bra001713.1-P	Field mustard	nucleus	58.04	56.6
HORVU4Hr1G000640.1	Barley	cytosol, nucleus	46.36	55.13
GSMUA_Achr7P07500_001	Banana	cytosol, nucleus, peroxisome	51.78	54.84
TraesCS6D01G292400.1	Wheat	nucleus	50.42	53.89
TraesCS6A01G312900.1	Wheat	nucleus	49.92	53.35
TraesCS5A01G114200.1	Wheat	nucleus	52.12	53.1
TraesCS5D01G127000.1	Wheat	nucleus	51.78	52.76
TraesCS5B01G120400.1	Wheat	nucleus	51.78	52.76
TraesCS6B01G342900.1	Wheat	nucleus	48.73	52.75
Os03t0802700-01	Rice	nucleus	52.28	52.37
TraesCS5A01G042300.1	Wheat	nucleus	50.08	51.39
EER90714	Sorghum	nucleus	53.81	51.04
TraesCS6A01G356000.1	Wheat	nucleus	48.9	50.44
Os06t0535100-00	Rice	nucleus	49.24	50.0
Zm00001d000431_P001	Maize	plastid	40.78	49.59
TraesCS5D01G050600.1	Wheat	nucleus	46.87	49.55
KXG37786	Sorghum	nucleus	37.39	48.79
OQU76528	Sorghum	nucleus	49.07	48.41
Zm00001d023501_P001	Maize	nucleus	48.9	47.93
HORVU5Hr1G010160.3	Barley	cytosol	48.73	47.84
Zm00001d013056_P001	Maize	nucleus	52.12	46.95
TraesCS7B01G213800.1	Wheat	nucleus	24.03	45.95
TraesCS7D01G309800.1	Wheat	nucleus	23.69	44.87
TraesCS7A01G313300.1	Wheat	nucleus	23.35	44.66
Bra029342.1-P	Field mustard	cytosol	25.04	32.74
Bra004584.1-P	Field mustard	nucleus	31.3	30.13
Bra026724.1-P	Field mustard	nucleus	23.86	29.01
Bra002946.1-P	Field mustard	nucleus	35.7	28.36
Bra028652.1-P	Field mustard	nucleus	25.21	27.54
Bra009356.1-P	Field mustard	cytosol	25.55	26.92
Bra028757.1-P	Field mustard	nucleus	26.23	26.09
Bra009114.1-P	Field mustard	nucleus	25.38	25.21
Bra038650.1-P	Field mustard	mitochondrion	26.06	20.73
Bra009355.1-P	Field mustard	mitochondrion, plastid	26.06	20.21
Bra021205.1-P	Field mustard	mitochondrion, nucleus, plastid	21.49	20.19
Bra027808.1-P	Field mustard	mitochondrion	26.06	19.72
Bra003691.1-P	Field mustard	cytosol	23.18	16.08
Bra040743.1-P	Field mustard	nucleus	23.01	15.56
Bra038492.1-P	Field mustard	nucleus	21.15	13.77

Protein Annotations

Gene3D:3.40.50.300	MapMan:35.1	EnsemblPlantsGene:Bra024428	EnsemblPlants:Bra024428.1	EnsemblPlants:Bra024428.1-P	ncoils:Coil
InterPro:DEAD/DEAH_box_helicase_dom	InterPro:DUF4217	GO:GO:0000166	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723
GO:GO:0003824	GO:GO:0004386	GO:GO:0005488	GO:GO:0005524	GO:GO:0016787	InterPro:Helicase_ATP-bd
InterPro:Helicase_C	InterPro:IPR001650	InterPro:IPR014001	InterPro:IPR014014	UniProt:M4E6M4	InterPro:P-loop_NTPase
PFAM:PF00270	PFAM:PF00271	PFAM:PF13959	ScanProsite:PS00039	PFscan:PS51192	PFscan:PS51194
PFscan:PS51195	PANTHER:PTHR24031	PANTHER:PTHR24031:SF305	InterPro:RNA-helicase_DEAD-box_CS	InterPro:RNA_helicase_DEAD_Q_motif	SMART:SM00487
SMART:SM00490	SMART:SM01178	SUPFAM:SSF52540	UniParc:UPI000253EEB6	SEG:seg	:

Description

AT5G65900 (E=1e-217) | DEAD/DEAH box helicase, putative

Coordinates

chrA06:+:15747738..15750456

Molecular Weight (calculated)

66957.2 Da

IEP (calculated)

9.846

GRAVY (calculated)

-0.550

Length

591 amino acids

Sequence
(BLAST)

001: MANLDMEQHS PEKEEMKTKT KKKRSRDKDK AKILKQLAKT EVKEPKAITD EEPKKKKKKK LKQVAMEDEE TKAINDEEPK KKKKKKAKQL EEEEEDKVEE
101: SGGNGIMTNE TFESLGLSDN THKSIKEMGF ARMTQIQAKA IPPLMMGKDV LGAARTGSGK TLAFLIPAVE LLYHVRFTPR NGTGVIVICP TRELAIQSYL
201: VAKELLKFHS QTVGKVIGGE PRKKEVEILV KGVNLLVATP GRLLDHLENT DGFVFKNLKF LVMDEADRIL EQNFEEDMKK IIKLLPKTRQ TSLFSATQTS
301: KVEDLARVSL TSPVYIDVDE GRKEVTNEGL EQGYCVVPSA KRLLFLLTFL KTFHGKKKIM VFFSTCKSTK FHTELFRYIK IDCLAIHGGM EQSKRTSTFF
401: QFVKLETGVL LCTNVGARGL DFPHVDWIVQ YDPPDDPTEY IHRVGRTARG EGAKGKALLV LTPTELQFIQ YLKAAKIPVE EHEFEEEKLL NVQAFLEKTI
501: SENSALSVSA KEAYKTYISG YDSHSMKDVF NAHRLDLKEV AASFCFSSPP KVLLKIHREG DGYRSKREPV NNKFNRGRGG RPGGKTKFER Y

Best Arabidopsis Sequence Match ( AT5G65900.1 )
(BLAST)

001: MANLDMEQHS SENEEIKKKK HKKRARDEAK KLKQPAMEEE PDHEDGDAKE NNALIDEEPK KKKKKKNKKR GDTDDGEDEA VAEEEPKKKK KKNKKLQQRG
101: DTNDEEDEVI AEEEEPKKKK KKQRKDTEAK SEEEEVEDKE EEKKLEETSI MTNKTFESLS LSDNTYKSIK EMGFARMTQI QAKAIPPLMM GEDVLGAART
201: GSGKTLAFLI PAVELLYRVK FTPRNGTGVL VICPTRELAI QSYGVAKELL KYHSQTVGKV IGGEKRKTEA EILAKGVNLL VATPGRLLDH LENTNGFIFK
301: NLKFLVMDEA DRILEQNFEE DLKKILNLLP KTRQTSLFSA TQSAKVEDLA RVSLTSPVYI DVDEGRKEVT NEGLEQGYCV VPSAMRLLFL LTFLKRFQGK
401: KKIMVFFSTC KSTKFHAELF RYIKFDCLEI RGGIDQNKRT PTFLQFIKAE TGILLCTNVA ARGLDFPHVD WIVQYDPPDN PTDYIHRVGR TARGEGAKGK
501: ALLVLTPQEL KFIQYLKAAK IPVEEHEFEE KKLLDVKPFV ENLISENYAL KESAKEAYKT YISGYDSHSM KDVFNVHQLN LTEVATSFGF SDPPKVALKI
601: DRGGYRSKRE PVNKFKRGRG GGRPGGKSKF ERY

Arabidopsis Description

RH27DEAD-box ATP-dependent RNA helicase 27 [Source:UniProtKB/Swiss-Prot;Acc:Q9SB89]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.