Factsheet for TraesCS5A01G042300.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

cytosol 1
mitochondrion 1
nucleus 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS5D01G050600.1	Wheat	nucleus	89.76	92.49
HORVU5Hr1G010160.3	Barley	cytosol	93.4	89.37
TraesCS6A01G312900.1	Wheat	nucleus	79.51	82.82
OQU76528	Sorghum	nucleus	81.6	78.46
TraesCS6A01G356000.1	Wheat	nucleus	77.95	78.36
Zm00001d023501_P001	Maize	nucleus	78.99	75.46
TraesCS5A01G114200.1	Wheat	nucleus	72.4	71.9
Os06t0535100-00	Rice	nucleus	69.97	69.24
GSMUA_Achr10P...	Banana	cytosol	60.59	67.5
VIT_17s0000g04310.t01	Wine grape	cytosol	58.16	60.91
Solyc03g114370.2.1	Tomato	nucleus	57.99	59.01
GSMUA_Achr7P07500_001	Banana	cytosol, nucleus, peroxisome	56.94	58.78
TraesCS7A01G313300.1	Wheat	nucleus	31.42	58.58
KRH62970	Soybean	nucleus	55.03	58.49
PGSC0003DMT400063252	Potato	nucleus	57.29	58.3
KRH54795	Soybean	nucleus	54.69	57.59
KRH03838	Soybean	nucleus	57.12	57.22
KRH56711	Soybean	nucleus	56.6	56.99
Bra037574.1-P	Field mustard	nucleus	53.12	54.06
CDY18530	Canola	nucleus	53.12	53.87
Bra022336.1-P	Field mustard	nucleus	53.12	53.87
CDX92251	Canola	nucleus	52.95	53.6
CDX99342	Canola	nucleus	52.6	53.35
CDX95512	Canola	nucleus	52.78	53.33
CDX82336	Canola	nucleus	52.95	53.23
AT3G18600.1	Thale cress	nucleus	51.91	52.64
CDX75974	Canola	nucleus	53.12	52.58
CDY36514	Canola	nucleus	51.22	50.6
Bra001713.1-P	Field mustard	nucleus	52.95	50.33
Bra024428.1-P	Field mustard	nucleus	51.39	50.08
CDY08740	Canola	nucleus	51.39	49.83
AT5G65900.1	Thale cress	nucleus	50.52	45.97
TraesCS6A01G114900.1	Wheat	nucleus	23.09	29.1
TraesCS3A01G222500.1	Wheat	nucleus, plastid	27.08	29.0
TraesCS2A01G128700.1	Wheat	nucleus	22.92	28.82
TraesCS1A01G030500.1	Wheat	nucleus	29.51	27.78
TraesCS3A01G222700.1	Wheat	mitochondrion	27.08	26.53
TraesCS2A01G154800.1	Wheat	cytosol	22.92	25.88
TraesCS3A01G100100.1	Wheat	plastid	27.43	24.53
TraesCS2A01G222000.1	Wheat	mitochondrion, nucleus	30.73	23.32
TraesCS5A01G375900.1	Wheat	nucleus	25.17	18.64
TraesCS7A01G350700.1	Wheat	mitochondrion	28.82	17.15
TraesCS5A01G510500.1	Wheat	nucleus	25.0	16.9
TraesCS6A01G409100.1	Wheat	cytosol	24.65	16.03
TraesCS2A01G366700.1	Wheat	nucleus	21.18	14.46

Protein Annotations

Gene3D:3.40.50.300	MapMan:35.1	InterPro:DEAD/DEAH_box_helicase_dom	InterPro:DUF4217	GO:GO:0000166	GO:GO:0003674
GO:GO:0003676	GO:GO:0005488	GO:GO:0005524	InterPro:Helicase_ATP-bd	InterPro:Helicase_C	InterPro:IPR001650
InterPro:IPR014001	InterPro:IPR014014	InterPro:P-loop_NTPase	PFAM:PF00270	PFAM:PF00271	PFAM:PF13959
ScanProsite:PS00039	PFscan:PS51192	PFscan:PS51194	PFscan:PS51195	PANTHER:PTHR24031	PANTHER:PTHR24031:SF305
InterPro:RNA-helicase_DEAD-box_CS	InterPro:RNA_helicase_DEAD_Q_motif	SMART:SM00487	SMART:SM00490	SMART:SM01178	SUPFAM:SSF52540
EnsemblPlantsGene:TraesCS5A01G042300	EnsemblPlants:TraesCS5A01G042300.1	TIGR:cd00079	TIGR:cd00268	SEG:seg	:

Description

No Description!

Coordinates

chr5A:+:38126219..38127949

Molecular Weight (calculated)

65300.0 Da

IEP (calculated)

9.639

GRAVY (calculated)

-0.491

Length

576 amino acids

Sequence
(BLAST)

001: MYLSPCSLSA EPSENPVALP ESIHHAVCDE DEGIQGKEEE EEENVMEEIG KEGKRKRKEE KGKKEKKRHK GKAGGILTNK LFSELAISEL TAKAIGEMNY
101: THLTQIQARS IPHLMLGSDV LGSARTGSGK TLAFLIPAIE LLHKARFTPR NGTGVIVVCP TRELAMQTHN VAKELMKHHS QTLGYVIGGT YMRSEANQLV
201: EGINLLVATP GRLLDHLRST GGFNYKGLQC LIIDEADRIL EQNFEEDMKQ IFKRLPRDRQ TVLFSATQTK RVEDFANLTF GKNEERQRKL VYVGVDDSEL
301: KPTVEGLQQG YCVIPSEERL LVLYAFLRRM RLKQKVKVMV FFSSCSSVKF HAELLNFLGI ECYDIHGQLK QQKRTSTFFR FSKEEKGILL CTNVAARGLD
401: IPDVDYIVQF DPPDDPKDYI HRVGRTARGD KGKGHALLFL LPEEMKLLIY LRASNISLTE HKFNGKHVPK LQPQLEKIVA ENYFLKQSAK EAYRSYLLAY
501: NSHSMKDIFG VHHLDLKKVA ASFCFNNPPK VNLNLESSAS KHRKMRKVDG GKRHGISPSN PYGRRGGDDR RQFVRF

Best Arabidopsis Sequence Match ( AT3G18600.1 )
(BLAST)

001: MVESDKSSVE ELKKRVRKRS RGKKNEQQKA EEKTHTVEEN ADETQKKSEK KVKKVRGKIE EEEEKVEAME DGEDEKNIVI VGKGIMTNVT FDSLDLSEQT
101: SIAIKEMGFQ YMTQIQAGSI QPLLEGKDVL GAARTGSGKT LAFLIPAVEL LFKERFSPRN GTGVIVICPT RELAIQTKNV AEELLKHHSQ TVSMVIGGNN
201: RRSEAQRIAS GSNLVIATPG RLLDHLQNTK AFIYKHLKCL VIDEADRILE ENFEEDMNKI LKILPKTRQT ALFSATQTSK VKDLARVSLT SPVHVDVDDG
301: RRKVTNEGLE QGYCVVPSKQ RLILLISFLK KNLNKKIMVF FSTCKSVQFH TEIMKISDVD VSDIHGGMDQ NRRTKTFFDF MKAKKGILLC TDVAARGLDI
401: PSVDWIIQYD PPDKPTEYIH RVGRTARGEG AKGKALLVLI PEELQFIRYL KAAKVPVKEL EFNEKRLSNV QSALEKCVAK DYNLNKLAKD AYRAYLSAYN
501: SHSLKDIFNV HRLDLLAVAE SFCFSSPPKV NLNIESGAGK VRKARKQQGR NGFSPYSPYG KSTPTKEA

Arabidopsis Description

RH51DEAD-box ATP-dependent RNA helicase 51 [Source:UniProtKB/Swiss-Prot;Acc:Q9LIH9]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.