Skip to main content
crop-pal logo
Soybean
Search for another protein from :
Soybean
Subcellular Localization
min:
: max

 
Winner_takes_all: nucleus

Predictor Summary:
  • nucleus 4
  • mitochondrion 1
  • cytosol 1
Predictors GFP MS/MS Papers
Winner Takes All:nucleus
Any Predictor:cytosol, mitochondrion, nucleus
BaCelLo:nucleus
MultiLoc:nucleus
Plant-mPloc:nucleus
PProwler:mitochondrion
WoLF PSORT:nucleus
YLoc:cytosol
 nucleus: 21132161
endoplasmic reticulum: 23041469
endoplasmic reticulum: 28499913
nucleus: 28499913
msms PMID: 21132161 doi
B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick
Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov
msms PMID: 23041469 doi
S Komatsu, R Kuji, Y Nanjo, S Hiraga, K Furukawa
National Institute of Crop Science, Tsukuba 305-8518, Japan. skomatsu@affrc.go.jp
msms PMID: 28499913 doi
S Komatsu, X Wang, X Yin, Y Nanjo, H Ohyanagi, K Sakata
Department of Life Science and Informatics, Maebashi Institute of Technology, Maebashi 371-0816, Japan. Electronic address: ksakata@maebashi-it.ac.jp., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan. Electronic address: komatsu.setsuko.fu@u.tsukuba.ac.jp., King Abdullah University of Science and Technology (KAUST), Computational Bioscience Research Center (CBRC), Thuwal 23955-6900, Saudi Arabia.
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
KRH62970 Soybean nucleus 94.33 95.2
VIT_17s0000g04310.t01 Wine grape cytosol 73.31 72.91
KRH56711 Soybean nucleus 76.23 72.9
KRH03838 Soybean nucleus 76.23 72.52
PGSC0003DMT400063252 Potato nucleus 72.03 69.61
Solyc03g114370.2.1 Tomato nucleus 71.85 69.43
GSMUA_Achr10P... Banana cytosol 65.08 68.86
HORVU4Hr1G000640.1 Barley cytosol, nucleus 55.39 60.97
Bra022336.1-P Field mustard nucleus 63.25 60.92
CDX99342 Canola nucleus 62.89 60.56
CDX92251 Canola nucleus 62.89 60.46
Bra037574.1-P Field mustard nucleus 62.34 60.25
AT3G18600.1 Thale cress nucleus 62.52 60.21
CDX95512 Canola nucleus 62.71 60.18
CDY18530 Canola nucleus 62.34 60.04
CDX82336 Canola nucleus 62.89 60.03
GSMUA_Achr7P07500_001 Banana cytosol, nucleus, peroxisome 61.06 59.86
CDX75974 Canola nucleus 63.25 59.45
TraesCS5B01G120400.1 Wheat nucleus 62.34 58.79
TraesCS5A01G114200.1 Wheat nucleus 62.34 58.79
TraesCS5D01G127000.1 Wheat nucleus 62.16 58.62
Os03t0802700-01 Rice nucleus 61.06 56.61
Bra001713.1-P Field mustard nucleus 62.71 56.6
TraesCS6D01G292400.1 Wheat nucleus 56.67 56.06
CDY36514 Canola nucleus 59.6 55.92
TraesCS6A01G312900.1 Wheat nucleus 56.31 55.7
Bra024428.1-P Field mustard nucleus 59.96 55.5
EER90714 Sorghum nucleus 63.07 55.38
CDY08740 Canola nucleus 59.96 55.22
TraesCS6B01G342900.1 Wheat nucleus 54.84 54.95
TraesCS5A01G042300.1 Wheat nucleus 57.59 54.69
TraesCS6A01G356000.1 Wheat nucleus 56.67 54.1
TraesCS5D01G050600.1 Wheat nucleus 55.03 53.85
Os06t0535100-00 Rice nucleus 56.12 52.75
OQU76528 Sorghum nucleus 57.59 52.59
Zm00001d013056_P001 Maize nucleus 62.16 51.83
HORVU5Hr1G010160.3 Barley cytosol 57.04 51.83
Zm00001d023501_P001 Maize nucleus 57.04 51.74
Zm00001d000431_P001 Maize plastid 45.52 51.23
TraesCS7B01G213800.1 Wheat nucleus 28.88 51.13
AT5G65900.1 Thale cress nucleus 58.87 50.87
TraesCS7A01G313300.1 Wheat nucleus 28.7 50.81
TraesCS7D01G309800.1 Wheat nucleus 28.7 50.32
KXG37786 Sorghum nucleus 40.95 49.45
KRH65120 Soybean cytosol 26.51 33.03
KRH37539 Soybean nucleus 31.44 31.91
KRH48210 Soybean nucleus 18.46 31.56
KRH12590 Soybean nucleus 30.9 31.12
KRH73730 Soybean nucleus 36.2 26.54
KRG97683 Soybean nucleus 28.52 26.49
KRH37970 Soybean cytosol 15.17 25.94
KRH14417 Soybean cytosol, nucleus 23.58 24.43
KRH31184 Soybean nucleus 28.15 23.16
KRH47920 Soybean nucleus 28.88 22.48
KRH41139 Soybean nucleus 27.79 21.5
KRH13749 Soybean cytosol, plastid 23.22 21.49
KRH43700 Soybean cytosol 22.85 21.33
KRH06491 Soybean nucleus 29.07 19.73
KRH37947 Soybean plastid 20.29 18.85
KRH46113 Soybean nucleus 25.41 18.36
KRG98832 Soybean nucleus 25.23 18.18
KRH64859 Soybean nucleus 25.78 18.15
KRH09570 Soybean nucleus 25.59 18.02
KRH59841 Soybean nucleus 17.0 17.58
KRH54980 Soybean nucleus 5.67 17.42
KRH48208 Soybean nucleus 23.03 15.56
KRH65117 Soybean plastid 21.94 14.56
Protein Annotations
EntrezGene:100793807Gene3D:3.40.50.300MapMan:35.1EMBL:ACUP02003584InterPro:DEAD/DEAH_box_helicase_domInterPro:DUF4217
EnsemblPlantsGene:GLYMA_06G209400GO:GO:0000166GO:GO:0003674GO:GO:0003676GO:GO:0003723GO:GO:0003824
GO:GO:0004004GO:GO:0004386GO:GO:0005488GO:GO:0005524GO:GO:0005575GO:GO:0005622
GO:GO:0005623GO:GO:0005634GO:GO:0005730GO:GO:0005737GO:GO:0006139GO:GO:0008150
GO:GO:0008152GO:GO:0009987GO:GO:0010501GO:GO:0016787InterPro:Helicase_ATP-bdInterPro:Helicase_C
UniProt:I1KD65InterPro:IPR001650InterPro:IPR014001InterPro:IPR014014EnsemblPlants:KRH54795ProteinID:KRH54795
ProteinID:KRH54795.1InterPro:P-loop_NTPasePFAM:PF00270PFAM:PF00271PFAM:PF13959ScanProsite:PS00039
PFscan:PS51192PFscan:PS51194PFscan:PS51195PANTHER:PTHR24031PANTHER:PTHR24031:SF305InterPro:RNA-helicase_DEAD-box_CS
InterPro:RNA_helicase_DEAD_Q_motifSMART:SM00487SMART:SM00490SMART:SM01178SUPFAM:SSF52540UniParc:UPI00023C276A
SEG:seg:::::
Description
hypothetical protein
Coordinates
chr6:+:20622046..20629389
Molecular Weight (calculated)
61296.8 Da
IEP (calculated)
9.685
GRAVY (calculated)
-0.428
Length
547 amino acids
Sequence
(BLAST)
001: MAEAEHNDPT SPEREDQTKS NKKKLRKRKR PQKTEQKQEE EKNDANIDSA QTQTEDEGEN QEDTNVNNNV SSGIMSTESF SSLGLSEPTS KAIADMSFHR
101: MTQIQAKAIP TLLTGNDVLG AARTGAGKTL AFLVPAVELL YNVQFTPRNG TGVVVICPTR ELAIQTHAVA KELLKYHSLT LGLVIGGSGR KGEAERIMKG
201: VNLLVATPGR LLDHLQNTNG FVYKNLKCLM IDEADRILEA NFEEEMKQII NILPKKRQTA LFSATQTKKV KDLARLSFQT TPIYIDVDDG RKKVTNEGLQ
301: QGYVVVHCAK RFVVLYSFLR RYQSKKVMVF FSSCNSVKFH ADLLKCTGLD CLNIHGKQKQ HARTTTFFNF CKAEKGILLC TDVAARGLDI PDVDWIVQFD
401: PPDEPKEYIH RVGRTARGEG GKGNALLFLI PEELQFLHYL KAAKVPVKEY AFDHKKLANV QSQLEKLVAG IYHLNVMAKD AYRSYILAYN SHSMKDIFNV
501: HRLDLQAVAA SFCFSNPPKV NLNIDSSASK HRKKIRKVEG KINKGNL
Best Arabidopsis Sequence Match ( AT3G18600.1 )
(BLAST)
001: MVESDKSSVE ELKKRVRKRS RGKKNEQQKA EEKTHTVEEN ADETQKKSEK KVKKVRGKIE EEEEKVEAME DGEDEKNIVI VGKGIMTNVT FDSLDLSEQT
101: SIAIKEMGFQ YMTQIQAGSI QPLLEGKDVL GAARTGSGKT LAFLIPAVEL LFKERFSPRN GTGVIVICPT RELAIQTKNV AEELLKHHSQ TVSMVIGGNN
201: RRSEAQRIAS GSNLVIATPG RLLDHLQNTK AFIYKHLKCL VIDEADRILE ENFEEDMNKI LKILPKTRQT ALFSATQTSK VKDLARVSLT SPVHVDVDDG
301: RRKVTNEGLE QGYCVVPSKQ RLILLISFLK KNLNKKIMVF FSTCKSVQFH TEIMKISDVD VSDIHGGMDQ NRRTKTFFDF MKAKKGILLC TDVAARGLDI
401: PSVDWIIQYD PPDKPTEYIH RVGRTARGEG AKGKALLVLI PEELQFIRYL KAAKVPVKEL EFNEKRLSNV QSALEKCVAK DYNLNKLAKD AYRAYLSAYN
501: SHSLKDIFNV HRLDLLAVAE SFCFSSPPKV NLNIESGAGK VRKARKQQGR NGFSPYSPYG KSTPTKEA
Arabidopsis Description
RH51DEAD-box ATP-dependent RNA helicase 51 [Source:UniProtKB/Swiss-Prot;Acc:Q9LIH9]
SUBAcon: [nucleus]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.