Factsheet for TraesCS6D01G292400.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
peroxisome 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus, peroxisome
BaCelLo:	nucleus
MultiLoc:	nucleus
PProwler:	peroxisome
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS6A01G312900.1	Wheat	nucleus	96.75	96.75
TraesCS6B01G342900.1	Wheat	nucleus	91.68	92.86
HORVU4Hr1G000640.1	Barley	cytosol, nucleus	75.95	84.51
TraesCS5D01G050600.1	Wheat	nucleus	78.12	77.28
OQU76528	Sorghum	nucleus	79.39	73.29
Zm00001d023501_P001	Maize	nucleus	79.39	72.8
TraesCS5D01G127000.1	Wheat	nucleus	71.25	67.93
GSMUA_Achr10P...	Banana	cytosol	61.48	65.76
Os06t0535100-00	Rice	nucleus	69.08	65.64
VIT_17s0000g04310.t01	Wine grape	cytosol	58.95	59.27
Solyc03g114370.2.1	Tomato	nucleus	59.31	57.95
KRH62970	Soybean	nucleus	56.78	57.93
PGSC0003DMT400063252	Potato	nucleus	58.95	57.6
GSMUA_Achr7P07500_001	Banana	cytosol, nucleus, peroxisome	58.05	57.53
KRH54795	Soybean	nucleus	56.06	56.67
KRH03838	Soybean	nucleus	58.41	56.17
KRH56711	Soybean	nucleus	58.05	56.12
TraesCS7D01G309800.1	Wheat	nucleus	30.74	54.49
Bra037574.1-P	Field mustard	nucleus	54.79	53.53
CDY18530	Canola	nucleus	54.97	53.52
CDX99342	Canola	nucleus	54.97	53.52
Bra022336.1-P	Field mustard	nucleus	54.97	53.52
CDX92251	Canola	nucleus	54.97	53.43
CDX95512	Canola	nucleus	54.79	53.16
CDX82336	Canola	nucleus	54.79	52.88
AT3G18600.1	Thale cress	nucleus	54.25	52.82
CDX75974	Canola	nucleus	54.79	52.06
CDY36514	Canola	nucleus	53.53	50.77
Bra024428.1-P	Field mustard	nucleus	53.89	50.42
CDY08740	Canola	nucleus	53.89	50.17
Bra001713.1-P	Field mustard	nucleus	54.79	50.0
AT5G65900.1	Thale cress	nucleus	52.08	45.5
TraesCS2D01G131200.1	Wheat	nucleus	25.14	30.35
TraesCS6D01G103400.1	Wheat	nucleus	23.51	29.28
TraesCS3D01G230300.1	Wheat	nucleus	28.03	28.81
TraesCS1D01G031400.1	Wheat	nucleus	30.38	27.45
TraesCS3D01G230400.2	Wheat	mitochondrion	27.49	25.85
TraesCS2D01G160100.1	Wheat	cytosol	23.51	25.49
TraesCS3D01G100800.1	Wheat	plastid	28.21	24.26
TraesCS2D01G228000.1	Wheat	nucleus	30.56	22.12
TraesCS5D01G385400.1	Wheat	nucleus	24.59	17.48
TraesCS6D01G392700.1	Wheat	cytosol	26.04	17.1
TraesCS7D01G328100.1	Wheat	mitochondrion	29.66	17.1
TraesCS4D01G337100.1	Wheat	nucleus	24.95	16.22
TraesCS2D01G363700.1	Wheat	nucleus	21.34	14.11

Protein Annotations

Gene3D:3.40.50.300	MapMan:35.1	ncoils:Coil	InterPro:DEAD/DEAH_box_helicase_dom	InterPro:DUF4217	GO:GO:0000166
GO:GO:0003674	GO:GO:0003676	GO:GO:0005488	GO:GO:0005524	InterPro:Helicase_ATP-bd	InterPro:Helicase_C
InterPro:IPR001650	InterPro:IPR014001	InterPro:IPR014014	InterPro:P-loop_NTPase	PFAM:PF00270	PFAM:PF00271
PFAM:PF13959	ScanProsite:PS00039	PFscan:PS51192	PFscan:PS51194	PFscan:PS51195	PANTHER:PTHR24031
PANTHER:PTHR24031:SF305	InterPro:RNA-helicase_DEAD-box_CS	InterPro:RNA_helicase_DEAD_Q_motif	SMART:SM00487	SMART:SM00490	SMART:SM01178
SUPFAM:SSF52540	EnsemblPlantsGene:TraesCS6D01G292400	EnsemblPlants:TraesCS6D01G292400.1	TIGR:cd00079	TIGR:cd00268	SEG:seg

Description

No Description!

Coordinates

chr6D:+:403054570..403060220

Molecular Weight (calculated)

63074.2 Da

IEP (calculated)

9.432

GRAVY (calculated)

-0.481

Length

553 amino acids

Sequence
(BLAST)

001: MVKSLLHPSK EEEEEKEENV MDGMRKRKRE EEKGMDGMEE EKKEKKGKGG GIVTNELFSE LCVSELTSKA IREINYTHLT QIQARSIPHL MVGDDVLGSA
101: RTGSGKTLAF LIPAIELLHN ARFTPRNRTV VIVVCPTREL AIQTHDVAKK LMKYHSQTLG YVIGGTNMRS EANQLVKGVN LLVATPGRLL DHLKSTGGFN
201: YKGLKCLIID EADRILEQNF EEDMKQIFKR LPQNRQTVLF SATQTQKVED FATFTFGKKE ERQRELVYVG VDDSELKPTV DGLQQGYCVI PSEKRFLVLY
301: TFLRKMQLMK QKVKVMVFFS SCSSVKFHAE FLNFIGIECH EIHGQLKQQK RTTTFFQFSK EESGILLCTN VAARGLDIPN VDYIVQYDPP DDPKDYIHRV
401: GRTARGDKGQ GRAFLFLLPE ELKLLIYLHA SNISLTEYEF SEKHVPKSQS KLEKIVAGNY FLNQSAKEAY RSYLLAYNSH SMKDIFDVHQ LDLKKVAASF
501: CFNSPPKVNL NLESSASRHR KMRKVDGRKR HGISPSNPYG RRGGCDHMDL ARF

Best Arabidopsis Sequence Match ( AT1G71370.1 )
(BLAST)

001: MDSSPPKTIT KALPRFSELK PPLSEDIIEA LDRSGFEVCT PVQAETIPFL CSHKDVVVDA ATGSGKTLAF LLPFIEIIRR SNSYPPKPHQ VMGVIISPTR
101: ELSAQIHKVA EPFVSTLPNV NSVLLVGGRE VEADMNTLEE EGANLLIGTP GRLSDMMKRM EFLDFRNLEI LILDEADRLL DMGFQKQVNY IISRLPKQRR
201: TGLFSATQTQ AVADLAKAGL RNAMEVISGA ESKSKTSSGL YCEYLKCEAD QKSSQLVHLL IENKNKKLVV FFMTCACVDY WGLVLSKIPT LKSISFFSTH
301: GKMDQKGRDT ALASFTEASS GVLLCTDVAA RGLDIPGIDY VVQYDPPQDP DVFIHRVGRT ARMERQGRAI VFLMPKETDY VEFMRIRRVP LQERKCSENA
401: SDVIPIIRSL AIKDRAVLEK GLQAFVSFVR AYKEHHCSYI FSWKGLEIGK LAMGYGILSF PYISEVKQDR IGIVGFTPVQ GITFEDIKYK NKSREKQRQQ
501: NLLARKDKLQ QEKRGKRKKS SKEAVDDSNK ASRKRKLTGR QRQTIQTAQD EEEMNLRL

Arabidopsis Description

RH49DEAD-box ATP-dependent RNA helicase 49 [Source:UniProtKB/Swiss-Prot;Acc:Q8GXD6]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.