Factsheet for TraesCS3D01G230400.2

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 2
mitochondrion 5
nucleus 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS3A01G222700.1	Wheat	mitochondrion	98.64	98.64
TraesCS3B01G252600.1	Wheat	plastid	97.96	98.46
Os01t0618400-01	Rice	nucleus, plasma membrane	81.12	80.3
Zm00001d044208_P001	Maize	plastid	79.08	79.35
EES01082	Sorghum	mitochondrion, plastid	79.25	79.25
TraesCS3D01G230300.1	Wheat	nucleus	69.39	75.84
Bra009356.1-P	Field mustard	cytosol	55.61	58.29
Bra028652.1-P	Field mustard	nucleus	53.23	57.86
CDY40740	Canola	cytosol	53.06	57.67
AT5G08620.1	Thale cress	nucleus	55.1	57.55
CDY44780	Canola	mitochondrion	54.59	55.54
GSMUA_Achr8P04210_001	Banana	cytosol	66.67	52.97
KRH47920	Soybean	nucleus	62.76	52.49
CDX84428	Canola	mitochondrion	60.03	49.93
AT5G63630.2	Thale cress	mitochondrion, plastid	60.71	49.86
CDY41525	Canola	mitochondrion	59.86	49.51
VIT_15s0046g01010.t01	Wine grape	plastid	63.27	48.37
Bra038650.1-P	Field mustard	mitochondrion	59.86	47.38
Bra009355.1-P	Field mustard	mitochondrion, plastid	59.86	46.19
KRH06491	Soybean	nucleus	62.76	45.78
AT5G08610.1	Thale cress	mitochondrion, plastid	60.71	42.0
Solyc01g095740.2.1	Tomato	nucleus	60.71	41.03
PGSC0003DMT400000611	Potato	mitochondrion	60.37	40.76
TraesCS7D01G328100.1	Wheat	mitochondrion	59.18	36.29
TraesCS6D01G392700.1	Wheat	cytosol	46.77	32.66
TraesCS6D01G292400.1	Wheat	nucleus	25.85	27.49
TraesCS5D01G127000.1	Wheat	nucleus	27.04	27.41
TraesCS5D01G050600.1	Wheat	nucleus	25.51	26.83
TraesCS2D01G131200.1	Wheat	nucleus	20.75	26.64
CDY21554	Canola	mitochondrion	59.35	25.68
TraesCS6D01G103400.1	Wheat	nucleus	19.22	25.45
CDX69935	Canola	mitochondrion	59.52	25.38
TraesCS2D01G160100.1	Wheat	cytosol	21.43	24.71
TraesCS1D01G031400.1	Wheat	nucleus	23.47	22.55
TraesCS3D01G100800.1	Wheat	plastid	23.81	21.77
TraesCS7D01G309800.1	Wheat	nucleus	11.05	20.83
TraesCS2D01G228000.1	Wheat	nucleus	23.81	18.32
TraesCS5D01G385400.1	Wheat	nucleus	21.94	16.58
TraesCS2D01G363700.1	Wheat	nucleus	22.62	15.91
TraesCS4D01G337100.1	Wheat	nucleus	21.09	14.57

Protein Annotations

Gene3D:3.40.50.300	MapMan:35.1	InterPro:DEAD/DEAH_box_helicase_dom	GO:GO:0000166	GO:GO:0003674	GO:GO:0003676
GO:GO:0005488	GO:GO:0005524	InterPro:Helicase_ATP-bd	InterPro:Helicase_C	InterPro:IPR001650	InterPro:IPR014001
InterPro:IPR014014	InterPro:P-loop_NTPase	PFAM:PF00270	PFAM:PF00271	ScanProsite:PS00039	PFscan:PS51192
PFscan:PS51194	PFscan:PS51195	PANTHER:PTHR24031	PANTHER:PTHR24031:SF275	InterPro:RNA-helicase_DEAD-box_CS	InterPro:RNA_helicase_DEAD_Q_motif
SMART:SM00487	SMART:SM00490	SUPFAM:SSF52540	EnsemblPlantsGene:TraesCS3D01G230400	EnsemblPlants:TraesCS3D01G230400.2	TIGR:cd00079
TIGR:cd00268	SEG:seg	:	:	:	:

Description

No Description!

Coordinates

chr3D:-:313783133..313793753

Molecular Weight (calculated)

64172.9 Da

IEP (calculated)

10.412

GRAVY (calculated)

-0.225

Length

588 amino acids

Sequence
(BLAST)

001: MAGGDILLRT HGGLPVLARA SPCSLRLRFT ASGRRAPSSL AAAKVDIGDV VSQLRSGSAR GAADTKRQRR VSEGGLAFPR VVTSRIRGAE EEGKGEAPQL
101: NAEKIGGEAG GVDGSYLSET RFDQCAISEL SLKGVKDAGY GRMTQVQEAT LPVILQGKDV LAKAKTGTGK TVAFLLPAIE VLSKLPSSQR SQLRSSINLL
201: VMCPTRELAN QVAVEAKKLL KYHRSLGVQV VIGGTRITQE QRNMQANPCQ ILVATPGRLK DHLENTPGFS TRLKGVKVLV LDEADRLLDM GFRRDIEKIM
301: AATPKDRQTL LFSATVPEEV RQISHVAMRK DYRFINTVKE GDEETHSQVS QMYMIAPLDL HFSILYDVLK KHVADDADYK VIIFCTTAMV TKLVAEVLSQ
401: LKLNIREIHS RKSQSARTKV SDEFRRSKGV ILVSSDVSAR GVDYPDVTLV IQVGIPAGRE QYIHRIGRTG RKGKEGLGLL LLAPWESHFL TSVKDLSVSE
501: AVTPSVDSST QTEVKGALRR VEMKSKESAY QAWLGYYNSN KTIGGNKSRL VTLGEEFSRS MGLAAPPAIP KLILRKMGLS KVPGFRST

Best Arabidopsis Sequence Match ( AT1G63250.1 )
(BLAST)

001: MYSLILRERS GSITGSLWNR ISSRNMGGGP RTFPGGLNKW QWKRMHEKKA REKENKLLDQ EKQLYEARIR TEIRAKMWGN PDSGEKTAKS KQSHGPMSPK
101: EHIKTLADRF MKAGAEDFWN ENDGPVKKSD QGSRSGSDSI DSTSNSPIDV RRLVSATCDS MGKNRVFGSS RRGFSSMSRF KRNESSCDEG DDFDAKKLDT
201: LSPFSPKFAG TKEKVKSSRS VVGVIRNKGL FGRRKFRKND SSTEEDSDEE GDEGKMIGWM DMRKTGSSAS LGNHDIKLTK RVNRNVTDEE LYPPLDINTV
301: REDLSKRKSV DNVMEEKQEP HDSIYSAKRF DESCISPLTL KALSASGILK MTRVQDATLS ECLDGKDALV KAKTGTGKSM AFLLPAIETV LKAMNSGKGV
401: NKVAPIFALI LCPTRELASQ IAAEGKALLK FHDGIGVQTL IGGTRFKLDQ QRLESEPCQI LIATPGRLLD HIENKSGLTS RLMALKLFIV DEADLLLDLG
501: FRRDVEKIID CLPRQRQSLL FSATIPKEVR RVSQLVLKRD HSYIDTIGLG CVETHDKVRQ SCIVAPHESH FHLVPHLLKE HINNTPDYKI IVFCSTGMVT
601: SLMYTLLREM KLNVREIHAR KPQLHRTRVS DEFKESNRLI LVTSDVSARG MNYPDVTLVI QVGIPSDREQ YIHRLGRTGR EGKGGEGLLL IAPWERYFLD
701: ELKDLPLEPI PAPDLDSIVK HQVDQSMAKI DTSIKEAAYH AWLGYYNSVR ETGRDKTTLA ELANRFCHSI GLEKPPALFR RTAVKMGLKG ISGIPIRK

Arabidopsis Description

RH48Probable DEAD-box ATP-dependent RNA helicase 48 [Source:UniProtKB/Swiss-Prot;Acc:Q9C8S9]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.