Factsheet for TraesCS5D01G050600.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

cytosol 1
peroxisome 1
nucleus 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus, peroxisome
MultiLoc:	cytosol
PProwler:	peroxisome
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS5A01G042300.1	Wheat	nucleus	92.49	89.76
HORVU5Hr1G010160.3	Barley	cytosol	91.77	85.22
TraesCS6D01G292400.1	Wheat	nucleus	77.28	78.12
OQU76528	Sorghum	nucleus	78.18	72.95
Zm00001d023501_P001	Maize	nucleus	76.03	70.48
TraesCS5D01G127000.1	Wheat	nucleus	70.13	67.59
Os06t0535100-00	Rice	nucleus	68.34	65.64
GSMUA_Achr10P...	Banana	cytosol	59.03	63.83
VIT_17s0000g04310.t01	Wine grape	cytosol	56.71	57.64
KRH62970	Soybean	nucleus	54.2	55.9
Solyc03g114370.2.1	Tomato	nucleus	56.17	55.48
GSMUA_Achr7P07500_001	Banana	cytosol, nucleus, peroxisome	55.28	55.38
KRH54795	Soybean	nucleus	53.85	55.03
PGSC0003DMT400063252	Potato	nucleus	55.28	54.59
KRH03838	Soybean	nucleus	55.46	53.91
KRH56711	Soybean	nucleus	54.92	53.67
TraesCS7D01G309800.1	Wheat	nucleus	29.34	52.56
Bra022336.1-P	Field mustard	nucleus	52.06	51.23
Bra037574.1-P	Field mustard	nucleus	51.7	51.06
CDX92251	Canola	nucleus	51.88	50.97
CDY18530	Canola	nucleus	51.7	50.88
CDX99342	Canola	nucleus	51.52	50.7
CDX95512	Canola	nucleus	51.7	50.7
CDX82336	Canola	nucleus	51.7	50.44
AT3G18600.1	Thale cress	nucleus	50.8	50.0
CDX75974	Canola	nucleus	51.88	49.83
Bra001713.1-P	Field mustard	nucleus	51.88	47.85
CDY36514	Canola	nucleus	49.37	47.34
Bra024428.1-P	Field mustard	nucleus	49.55	46.87
CDY08740	Canola	nucleus	49.55	46.63
AT5G65900.1	Thale cress	nucleus	49.55	43.76
TraesCS3D01G230300.1	Wheat	nucleus	26.3	27.32
TraesCS2D01G131200.1	Wheat	nucleus	22.18	27.07
TraesCS6D01G103400.1	Wheat	nucleus	21.29	26.8
TraesCS1D01G031400.1	Wheat	nucleus	29.16	26.63
TraesCS3D01G230400.2	Wheat	mitochondrion	26.83	25.51
TraesCS2D01G160100.1	Wheat	cytosol	22.9	25.1
TraesCS3D01G100800.1	Wheat	plastid	27.01	23.48
TraesCS2D01G228000.1	Wheat	nucleus	29.7	21.73
TraesCS5D01G385400.1	Wheat	nucleus	24.87	17.87
TraesCS6D01G392700.1	Wheat	cytosol	25.58	16.98
TraesCS7D01G328100.1	Wheat	mitochondrion	28.09	16.37
TraesCS4D01G337100.1	Wheat	nucleus	24.87	16.33
TraesCS2D01G363700.1	Wheat	nucleus	20.93	14.0

Protein Annotations

Gene3D:3.40.50.300	MapMan:35.1	InterPro:DEAD/DEAH_box_helicase_dom	InterPro:DUF4217	GO:GO:0000166	GO:GO:0003674
GO:GO:0003676	GO:GO:0005488	GO:GO:0005524	InterPro:Helicase_ATP-bd	InterPro:Helicase_C	InterPro:IPR001650
InterPro:IPR014001	InterPro:IPR014014	InterPro:P-loop_NTPase	PFAM:PF00270	PFAM:PF00271	PFAM:PF13959
ScanProsite:PS00039	PFscan:PS51192	PFscan:PS51194	PFscan:PS51195	PANTHER:PTHR24031	PANTHER:PTHR24031:SF305
InterPro:RNA-helicase_DEAD-box_CS	InterPro:RNA_helicase_DEAD_Q_motif	SMART:SM00487	SMART:SM00490	SMART:SM01178	SUPFAM:SSF52540
EnsemblPlantsGene:TraesCS5D01G050600	EnsemblPlants:TraesCS5D01G050600.1	TIGR:cd00079	TIGR:cd00268	SEG:seg	:

Description

No Description!

Coordinates

chr5D:+:48663913..48665656

Molecular Weight (calculated)

63239.6 Da

IEP (calculated)

9.593

GRAVY (calculated)

-0.453

Length

559 amino acids

Sequence
(BLAST)

001: MYLSPCNLSA EPSENPVALP ESIHHAVCDE EEGIQGIEEG RREEEEMEEN VMEEIGKVGK RKRKEEKGKK EKKRHKGKAG GILTNKLFSE LAISELTAKA
101: VREMNYTHLT QIQARSIPHL VLGSDVLGSA RIGSGKTLAF LIPAVELLHK ARFAPRNGTG VVVVCPTREL AMQTHNVAKE LMKYHSQTLG YVIGGTNMRS
201: EANQLVEGVN LLVATPGRLL DHLRSTSGFN YKGLQCLIID EADRILEQNF EEDMKQIFKR LPRDRQTVLF SATQTKRVED FANLTFGKNE ERQRKLVYVG
301: VDDSEFKPTV EGLQQGYCVI PSEERFLVLY AFLRKMQLKQ KVKVMVFFSS CSSVKFHAEL LNFLGIESET HHYILPISKE EKGILLCTNV AARGLDIPDV
401: DYIVQFDPPD DPKDYIHRVG RTARGDKGKG RALLFLLPEE MKLLIYLRAG KHVPKLQPQL EKIVAENYFL KQSAKEAYRS YLLAYNSHSM KDIFGVHQLD
501: LKKVAASFCF SSPPKVNLNL ESSASKHRKM KKVDGGKRHG ISPSNRRRGG DDRRQFARF

Best Arabidopsis Sequence Match ( AT1G71370.1 )
(BLAST)

001: MDSSPPKTIT KALPRFSELK PPLSEDIIEA LDRSGFEVCT PVQAETIPFL CSHKDVVVDA ATGSGKTLAF LLPFIEIIRR SNSYPPKPHQ VMGVIISPTR
101: ELSAQIHKVA EPFVSTLPNV NSVLLVGGRE VEADMNTLEE EGANLLIGTP GRLSDMMKRM EFLDFRNLEI LILDEADRLL DMGFQKQVNY IISRLPKQRR
201: TGLFSATQTQ AVADLAKAGL RNAMEVISGA ESKSKTSSGL YCEYLKCEAD QKSSQLVHLL IENKNKKLVV FFMTCACVDY WGLVLSKIPT LKSISFFSTH
301: GKMDQKGRDT ALASFTEASS GVLLCTDVAA RGLDIPGIDY VVQYDPPQDP DVFIHRVGRT ARMERQGRAI VFLMPKETDY VEFMRIRRVP LQERKCSENA
401: SDVIPIIRSL AIKDRAVLEK GLQAFVSFVR AYKEHHCSYI FSWKGLEIGK LAMGYGILSF PYISEVKQDR IGIVGFTPVQ GITFEDIKYK NKSREKQRQQ
501: NLLARKDKLQ QEKRGKRKKS SKEAVDDSNK ASRKRKLTGR QRQTIQTAQD EEEMNLRL

Arabidopsis Description

RH49DEAD-box ATP-dependent RNA helicase 49 [Source:UniProtKB/Swiss-Prot;Acc:Q8GXD6]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.