CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
mitochondrion 1
cytosol 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

nucleus: 21132161

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH56711	Soybean	nucleus	96.35	96.85
VIT_17s0000g04310.t01	Wine grape	cytosol	74.96	78.36
KRH62970	Soybean	nucleus	73.57	78.04
KRH54795	Soybean	nucleus	72.52	76.23
GSMUA_Achr10P...	Banana	cytosol	67.3	74.85
PGSC0003DMT400063252	Potato	nucleus	73.57	74.73
Solyc03g114370.2.1	Tomato	nucleus	73.22	74.38
Bra022336.1-P	Field mustard	nucleus	63.65	64.44
GSMUA_Achr7P07500_001	Banana	cytosol, nucleus, peroxisome	62.26	64.16
CDX92251	Canola	nucleus	63.13	63.8
CDX99342	Canola	nucleus	62.96	63.73
CDX95512	Canola	nucleus	63.13	63.68
Bra037574.1-P	Field mustard	nucleus	62.61	63.6
CDY18530	Canola	nucleus	62.78	63.56
CDX82336	Canola	nucleus	63.13	63.35
CDX75974	Canola	nucleus	63.48	62.71
TraesCS5D01G127000.1	Wheat	nucleus	62.96	62.41
TraesCS5A01G114200.1	Wheat	nucleus	62.78	62.24
TraesCS5B01G120400.1	Wheat	nucleus	62.61	62.07
AT3G18600.1	Thale cress	nucleus	61.22	61.97
HORVU4Hr1G000640.1	Barley	cytosol, nucleus	53.57	61.97
Os03t0802700-01	Rice	nucleus	63.3	61.69
Bra001713.1-P	Field mustard	nucleus	63.3	60.07
EER90714	Sorghum	nucleus	64.35	59.39
CDY36514	Canola	nucleus	59.48	58.66
TraesCS6D01G292400.1	Wheat	nucleus	56.17	58.41
Bra024428.1-P	Field mustard	nucleus	60.0	58.38
CDY08740	Canola	nucleus	60.0	58.08
TraesCS6A01G312900.1	Wheat	nucleus	55.83	58.05
TraesCS5A01G042300.1	Wheat	nucleus	57.22	57.12
TraesCS6A01G356000.1	Wheat	nucleus	56.87	57.07
TraesCS6B01G342900.1	Wheat	nucleus	54.09	56.96
Os06t0535100-00	Rice	nucleus	57.04	56.36
TraesCS5D01G050600.1	Wheat	nucleus	53.91	55.46
Zm00001d013056_P001	Maize	nucleus	62.96	55.18
OQU76528	Sorghum	nucleus	57.04	54.76
Zm00001d023501_P001	Maize	nucleus	55.83	53.23
HORVU5Hr1G010160.3	Barley	cytosol	55.65	53.16
Zm00001d000431_P001	Maize	plastid	44.87	53.09
AT5G65900.1	Thale cress	nucleus	58.09	52.76
TraesCS7B01G213800.1	Wheat	nucleus	27.83	51.78
TraesCS7A01G313300.1	Wheat	nucleus	27.48	51.13
KXG37786	Sorghum	nucleus	40.17	50.99
TraesCS7D01G309800.1	Wheat	nucleus	27.65	50.96
KRH65120	Soybean	cytosol	26.61	34.85
KRH48210	Soybean	nucleus	18.43	33.12
KRH37539	Soybean	nucleus	29.74	31.73
KRH12590	Soybean	nucleus	29.57	31.31
KRG97683	Soybean	nucleus	28.35	27.67
KRH73730	Soybean	nucleus	35.48	27.35
KRH37970	Soybean	cytosol	14.09	25.31
KRH14417	Soybean	cytosol, nucleus	22.78	24.81
KRH31184	Soybean	nucleus	28.35	24.51
KRH47920	Soybean	nucleus	28.35	23.19
KRH43700	Soybean	cytosol	23.3	22.87
KRH13749	Soybean	cytosol, plastid	23.48	22.84
KRH41139	Soybean	nucleus	27.13	22.07
KRH06491	Soybean	nucleus	28.7	20.47
KRH37947	Soybean	plastid	20.17	19.69
KRH59841	Soybean	nucleus	17.39	18.9
KRH46113	Soybean	nucleus	24.7	18.76
KRG98832	Soybean	nucleus	24.7	18.71
KRH64859	Soybean	nucleus	24.17	17.89
KRH09570	Soybean	nucleus	24.0	17.76
KRH54980	Soybean	nucleus	5.39	17.42
KRH48208	Soybean	nucleus	23.48	16.67
KRH65117	Soybean	plastid	22.78	15.9

Protein Annotations

EntrezGene:100797375	Gene3D:3.40.50.300	MapMan:35.1	EMBL:ACUP02010364	InterPro:DEAD/DEAH_box_helicase_dom	InterPro:DUF4217
EnsemblPlantsGene:GLYMA_17G123300	GO:GO:0000166	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0003824
GO:GO:0004004	GO:GO:0004386	GO:GO:0005488	GO:GO:0005524	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0005730	GO:GO:0005737	GO:GO:0006139	GO:GO:0008150
GO:GO:0008152	GO:GO:0009987	GO:GO:0010501	GO:GO:0016787	InterPro:Helicase_ATP-bd	InterPro:Helicase_C
UniProt:I1MUH8	InterPro:IPR001650	InterPro:IPR014001	InterPro:IPR014014	EnsemblPlants:KRH03838	ProteinID:KRH03838
ProteinID:KRH03838.1	InterPro:P-loop_NTPase	PFAM:PF00270	PFAM:PF00271	PFAM:PF13959	ScanProsite:PS00039
PFscan:PS51192	PFscan:PS51194	PFscan:PS51195	PANTHER:PTHR24031	PANTHER:PTHR24031:SF305	InterPro:RNA-helicase_DEAD-box_CS
InterPro:RNA_helicase_DEAD_Q_motif	SMART:SM00487	SMART:SM00490	SMART:SM01178	SUPFAM:SSF52540	UniParc:UPI000233E4FA
SEG:seg	:	:	:	:	:

Description

hypothetical protein

Coordinates

chr17:-:9822955..9828946

Molecular Weight (calculated)

64862.3 Da

IEP (calculated)

9.949

GRAVY (calculated)

-0.519

Length

575 amino acids

Sequence
(BLAST)

001: MAETEDKTLQ ASPMNETKKM KKNKNKKKSD KKRPREIATE ERPEEEENEN NTDSDGESSK KKKKKKVEGE SEVKEKKVKN NGGSGIMSTE SFESLGLSEP
101: TYKAIMDMGF HHMTQIQARA IPPLLIGKDV LGAARTGSGK TLAFLIPAVE LLYNVKFTPR NGAGVIVICP TRELAIQTHA VAKELLKYHS QTLGLVIGGS
201: ARKIEAERIA KGINLLVGTP GRLLDHLQNT KGFIYKNLKC LMIDEADRIL EANFEEEMKQ IIKILPKNRQ TALFSATQTK KVEDLARLSF QTTPIYIDVD
301: DGRTKVTNEG LLQGYVVVPC AKRFIVLYSF LKRHQSKKVM VFFSSCNSVK FHADILNLIQ LNCSSIHGKQ KQQSRTTTFF DFCKAEKGIL LCTDVAARGL
401: DIPAVDWIVQ YDPPDEPKEY IHRVGRTARG EGGKGNALLF LIPEELQFLR YLKAAKVPVK EYAYDEKKVA NVQSHLENLV VNNFYLNKMA KEAYRSYILA
501: YNSHSMKDIF NIHHLDLQAV ASSFCFSNPP NVSLNINSSK QRNKMRKVDG SRHGFSGDNP YGKRNADDKR QFVRY

Best Arabidopsis Sequence Match ( AT3G18600.1 )
(BLAST)

001: MVESDKSSVE ELKKRVRKRS RGKKNEQQKA EEKTHTVEEN ADETQKKSEK KVKKVRGKIE EEEEKVEAME DGEDEKNIVI VGKGIMTNVT FDSLDLSEQT
101: SIAIKEMGFQ YMTQIQAGSI QPLLEGKDVL GAARTGSGKT LAFLIPAVEL LFKERFSPRN GTGVIVICPT RELAIQTKNV AEELLKHHSQ TVSMVIGGNN
201: RRSEAQRIAS GSNLVIATPG RLLDHLQNTK AFIYKHLKCL VIDEADRILE ENFEEDMNKI LKILPKTRQT ALFSATQTSK VKDLARVSLT SPVHVDVDDG
301: RRKVTNEGLE QGYCVVPSKQ RLILLISFLK KNLNKKIMVF FSTCKSVQFH TEIMKISDVD VSDIHGGMDQ NRRTKTFFDF MKAKKGILLC TDVAARGLDI
401: PSVDWIIQYD PPDKPTEYIH RVGRTARGEG AKGKALLVLI PEELQFIRYL KAAKVPVKEL EFNEKRLSNV QSALEKCVAK DYNLNKLAKD AYRAYLSAYN
501: SHSLKDIFNV HRLDLLAVAE SFCFSSPPKV NLNIESGAGK VRKARKQQGR NGFSPYSPYG KSTPTKEA

Arabidopsis Description

RH51DEAD-box ATP-dependent RNA helicase 51 [Source:UniProtKB/Swiss-Prot;Acc:Q9LIH9]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.