Factsheet for Os03t0802700-01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
plastid 3

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus, plastid
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	nucleus

nucleus: 26035336

msms PMID: 26035336 doi

M Li, X Yin, K Sakata, P Yang, S Komatsu

§Department of Life Science and Informatics, Maebashi Institute of Technology, Maebashi 371-0816, Japan., †Key Laboratory of Plant Germplasm Enhancement and Specialty Agriculture, Wuhan Botanical Garden, Chinese Academy of Sciences, Wuhan 430074, China., ‡National Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS5A01G114200.1	Wheat	nucleus	80.85	82.24
TraesCS5B01G120400.1	Wheat	nucleus	80.85	82.24
TraesCS5D01G127000.1	Wheat	nucleus	80.85	82.24
EER90714	Sorghum	nucleus	81.69	77.37
Zm00001d013056_P001	Maize	nucleus	82.03	73.78
GSMUA_Achr10P...	Banana	cytosol	64.58	73.69
Os06t0535100-00	Rice	nucleus	68.81	69.76
VIT_17s0000g04310.t01	Wine grape	cytosol	61.19	65.64
GSMUA_Achr7P07500_001	Banana	cytosol, nucleus, peroxisome	60.68	64.16
KRH56711	Soybean	nucleus	61.53	63.46
KRH03838	Soybean	nucleus	61.69	63.3
KRH62970	Soybean	nucleus	57.63	62.73
PGSC0003DMT400063252	Potato	nucleus	60.0	62.54
Solyc03g114370.2.1	Tomato	nucleus	59.15	61.66
KRH54795	Soybean	nucleus	56.61	61.06
Bra022336.1-P	Field mustard	nucleus	54.75	56.87
CDX99342	Canola	nucleus	54.41	56.51
CDX92251	Canola	nucleus	54.24	56.24
AT3G18600.1	Thale cress	nucleus	53.9	55.99
CDX82336	Canola	nucleus	53.9	55.5
Bra037574.1-P	Field mustard	nucleus	52.88	55.12
CDX95512	Canola	nucleus	53.22	55.09
CDX75974	Canola	nucleus	54.24	54.98
CDY18530	Canola	nucleus	52.88	54.93
Bra001713.1-P	Field mustard	nucleus	54.07	52.64
CDY36514	Canola	nucleus	51.86	52.49
Bra024428.1-P	Field mustard	nucleus	52.37	52.28
CDY08740	Canola	nucleus	52.37	52.02
AT5G65900.1	Thale cress	nucleus	52.37	48.82
Os07t0660000-00	Rice	cytosol	24.07	31.91
Os03t0669000-01	Rice	cytosol, nucleus, plastid	24.24	30.3
Os05t0110500-02	Rice	nucleus	30.17	30.12
Os01t0618500-01	Rice	nucleus	26.78	29.48
Os07t0633500-00	Rice	nucleus	19.49	28.54
Os01t0618400-01	Rice	nucleus, plasma membrane	27.12	26.94
Os01t0164500-01	Rice	plastid	27.97	25.5
Os07t0517000-01	Rice	nucleus	17.8	20.04
Os12t0481100-01	Rice	nucleus	26.27	19.33
Os02t0826100-01	Rice	cytosol	25.42	18.5
Os06t0526600-01	Rice	mitochondrion	27.12	17.33
Os08t0416100-01	Rice	nucleus	24.41	16.92
Os04t0510400-01	Rice	nucleus	21.36	15.14

Protein Annotations

Gene3D:3.40.50.300	MapMan:35.1	EntrezGene:4334469	ProteinID:AAO72375.1	ProteinID:ABF99405.1	ProteinID:BAF13517.2
ProteinID:BAS86908.1	ncoils:Coil	InterPro:DEAD/DEAH_box_helicase_dom	InterPro:DUF4217	ProteinID:EAZ28951.1	GO:GO:0000166
GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0003824	GO:GO:0004004	GO:GO:0004386
GO:GO:0005488	GO:GO:0005524	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0005730	GO:GO:0005737	GO:GO:0006139	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987
GO:GO:0010501	GO:GO:0016787	InterPro:Helicase_ATP-bd	InterPro:Helicase_C	InterPro:IPR001650	InterPro:IPR014001
InterPro:IPR014014	EnsemblPlantsGene:Os03g0802700	EnsemblPlants:Os03t0802700-01	InterPro:P-loop_NTPase	PFAM:PF00270	PFAM:PF00271
PFAM:PF13959	ScanProsite:PS00039	PFscan:PS51192	PFscan:PS51194	PFscan:PS51195	PANTHER:PTHR24031
PANTHER:PTHR24031:SF305	UniProt:Q84T03	InterPro:RNA-helicase_DEAD-box_CS	InterPro:RNA_helicase_DEAD_Q_motif	SMART:SM00487	SMART:SM00490
SMART:SM01178	SUPFAM:SSF52540	UniParc:UPI0000056103	RefSeq:XP_015631966.1	SEG:seg	:

Description

RNA helicase 27RH27 helicase (Fragment). (Os03t0802700-01)

Coordinates

chr3:-:33489601..33493527

Molecular Weight (calculated)

66654.8 Da

IEP (calculated)

9.010

GRAVY (calculated)

-0.607

Length

590 amino acids

Sequence
(BLAST)

001: MAPAPATTSS SKRSKKRKQP VAPPPESDSE SEELSYDTAA ADEEEGEEEA PNQMEELEEE QEEEKKEKKQ KKEMSKEKKR KKEKGNEGGS GILTNMLFSE
101: LGVSEPTARA IREMNYTYLT QIQARSIPHL LNGKDVMGAA KTGSGKTLAF LIPAIEMLHH AHFMPRNGTG VVVVCPTREL AIQTHNVAKE LMKYHSQTLG
201: YIIGGNGRRG EADQLAKGVN LLVATPGRLL DHLQNTKGFI YRRLKCLIID EADRLLEQNF EEDMKQIFKR LPLNRQTVLF SATQTEQVKE FAKLSFEKNE
301: ESTSKPVYVG VDDAETNATV EGLQQGYCVI DSARRFLVLY AFLKKKQNKK VMVFFSSCNS VKFHAELLNF LQIECSDIHG KQKQQKRTTT FFNFCKAEKG
401: ILLCTNVAAR GLDIPDVDFI VQYDPPDEPK DYIHRVGRTA RGEKGKGEAL LFLLPQELKF LIYLKAAKIS LTELVFNENK VPNLQSHLEN IVGENYFLNQ
501: SAKEAYRSYI LAYDSHSMKD IFDVHNLNLK DVAASFCFKN PPKVNIDLES SASKHRRKMR KVDGGRRHGI SAANPYGRKG GDDKRQFARF

Best Arabidopsis Sequence Match ( AT3G18600.1 )
(BLAST)

001: MVESDKSSVE ELKKRVRKRS RGKKNEQQKA EEKTHTVEEN ADETQKKSEK KVKKVRGKIE EEEEKVEAME DGEDEKNIVI VGKGIMTNVT FDSLDLSEQT
101: SIAIKEMGFQ YMTQIQAGSI QPLLEGKDVL GAARTGSGKT LAFLIPAVEL LFKERFSPRN GTGVIVICPT RELAIQTKNV AEELLKHHSQ TVSMVIGGNN
201: RRSEAQRIAS GSNLVIATPG RLLDHLQNTK AFIYKHLKCL VIDEADRILE ENFEEDMNKI LKILPKTRQT ALFSATQTSK VKDLARVSLT SPVHVDVDDG
301: RRKVTNEGLE QGYCVVPSKQ RLILLISFLK KNLNKKIMVF FSTCKSVQFH TEIMKISDVD VSDIHGGMDQ NRRTKTFFDF MKAKKGILLC TDVAARGLDI
401: PSVDWIIQYD PPDKPTEYIH RVGRTARGEG AKGKALLVLI PEELQFIRYL KAAKVPVKEL EFNEKRLSNV QSALEKCVAK DYNLNKLAKD AYRAYLSAYN
501: SHSLKDIFNV HRLDLLAVAE SFCFSSPPKV NLNIESGAGK VRKARKQQGR NGFSPYSPYG KSTPTKEA

Arabidopsis Description

RH51DEAD-box ATP-dependent RNA helicase 51 [Source:UniProtKB/Swiss-Prot;Acc:Q9LIH9]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.