Factsheet for Os06t0526600-01

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 1
mitochondrion 6
nucleus 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
OQU76491	Sorghum	nucleus	56.45	79.42
TraesCS7D01G328100.1	Wheat	mitochondrion	73.56	70.8
Zm00001d046097_P001	Maize	mitochondrion	71.07	70.09
TraesCS7A01G350700.1	Wheat	mitochondrion	73.46	70.04
TraesCS7B01G232200.1	Wheat	mitochondrion	73.13	69.66
GSMUA_Achr10P...	Banana	mitochondrion	51.68	63.01
Os01t0618500-01	Rice	nucleus	35.86	61.75
Bra009356.1-P	Field mustard	cytosol	35.86	59.0
AT5G08620.1	Thale cress	nucleus	35.75	58.61
CDY40740	Canola	cytosol	34.34	58.6
Bra028652.1-P	Field mustard	nucleus	34.34	58.6
KRH47920	Soybean	nucleus	44.2	58.04
Os01t0618400-01	Rice	nucleus, plasma membrane	37.16	57.74
CDY44780	Canola	mitochondrion	34.78	55.54
AT5G63630.2	Thale cress	mitochondrion, plastid	42.58	54.89
CDX84428	Canola	mitochondrion	42.04	54.88
VIT_15s0046g01010.t01	Wine grape	plastid	45.72	54.88
CDY41525	Canola	mitochondrion	41.82	54.29
KRH06491	Soybean	nucleus	46.48	53.23
Bra038650.1-P	Field mustard	mitochondrion	41.71	51.82
Bra009355.1-P	Field mustard	mitochondrion, plastid	42.36	51.31
Solyc01g095740.2.1	Tomato	nucleus	46.8	49.66
PGSC0003DMT400000611	Potato	mitochondrion	46.15	48.91
AT5G08610.1	Thale cress	mitochondrion, plastid	44.75	48.59
Os02t0826100-01	Rice	cytosol	32.5	36.99
CDY21554	Canola	mitochondrion	41.82	28.4
CDX69935	Canola	mitochondrion	41.71	27.92
Os07t0633500-00	Rice	nucleus	12.13	27.79
Os03t0802700-01	Rice	nucleus	17.33	27.12
Os06t0535100-00	Rice	nucleus	16.47	26.12
Os07t0660000-00	Rice	cytosol	11.92	24.72
Os03t0669000-01	Rice	cytosol, nucleus, plastid	12.13	23.73
Os05t0110500-02	Rice	nucleus	14.52	22.67
Os01t0164500-01	Rice	plastid	14.52	20.71
Os12t0481100-01	Rice	nucleus	15.28	17.58
Os04t0510400-01	Rice	nucleus	15.38	17.07
Os07t0517000-01	Rice	nucleus	8.23	14.5
Os08t0416100-01	Rice	nucleus	13.33	14.45

Protein Annotations

Gene3D:3.40.50.300	MapMan:35.1	InterPro:DEAD/DEAH_box_helicase_dom	GO:GO:0000166	GO:GO:0003674	GO:GO:0003676
GO:GO:0003723	GO:GO:0003824	GO:GO:0004004	GO:GO:0004386	GO:GO:0005488	GO:GO:0005524
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005730	GO:GO:0005737
GO:GO:0006139	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0010501	GO:GO:0016787
InterPro:Helicase_ATP-bd	InterPro:Helicase_C	InterPro:IPR001650	InterPro:IPR014001	EnsemblPlantsGene:Os06g0526600	EnsemblPlants:Os06t0526600-01
InterPro:P-loop_NTPase	PFAM:PF00270	PFAM:PF00271	ScanProsite:PS00039	PFscan:PS51192	PFscan:PS51194
PANTHER:PTHR24031	PANTHER:PTHR24031:SF528	InterPro:RNA-helicase_DEAD-box_CS	SMART:SM00487	SMART:SM00490	SUPFAM:SSF52540
UniParc:UPI0001C7C8D2	SEG:seg	:	:	:	:

Description

DEAD-box helicase ATP-binding proteinDEAD-box helicase ATP-binding protein, Response to abiotic stress (salt, dehydration, ABA, blue and red light) (Os06t0526600-01)

Coordinates

chr6:-:19516630..19524702

Molecular Weight (calculated)

101111.0 Da

IEP (calculated)

8.825

GRAVY (calculated)

-0.702

Length

923 amino acids

Sequence
(BLAST)

001: MRRHHHLLGL LRRATASPTP ASRRAGPPLP GLLQDPLRNG AAAAGPRFFS SRAGPGAGAA AKSLIEDEAE LSDWISDLKT DSFHLGLSSG DEGEASTRGP
101: AASRGGRRGR DSRGPPPRSR FGGGDFGGDR RGFERRGRMV SNNELGDDDD DEDEVGFGSA RGRRDRGGRQ SEFSHRGRRG NDRGGRQSEF SYGGRRANDF
201: DDDGGGFRST RGQRGRGGRL ANVSRRGYDF DDEPGFQSPK GQRGQGGRYS DLDDDEGGFG SLRGRRGRGG RMSGVSRRGG RGSDLDDSED DEYSRGSSPR
301: GRRGRGGRMS GVSRKGGRGS DLDDSEDDEN DSIDSRGRRR DHGTRGRNVG SLGPQRGGRG GDADFSDRRS RGGKMFDFGL SEDDSELGEV DEDDGPSGFE
401: DDLFDDEGGE KNLVESPAKN SAPFESIKGE PIDQEGVVHT RESGGGDSYL SQTSIKLWTY GEISKDAIVL ILSLNCNFSS PYHVLTSLIY IGKDVLAKAK
501: TGTGKTVAFL LPAIEVVSKL PPIDCDKKRP PISVVVVCPT RELADQAAAE ANKLLKFHPS IGVQLVIGGT RMALEQKRMH TNPCQILVAT PGRLKDHMEN
601: TPGFATRLMG VKVLILDEAD RLLDMGFRTD IERIVAALPK QRQTLLFSAT VPDEVRQVCH IAMKRDLEFV NTVEEGSEET HSQVKQMHVV APLDKQFSIL
701: YGLLTDHISE NVDYKVIVFC TTAKVTSLVA ELLSELKLNV REIHSRKPQS YRTRISKEFK ESKGLILVSS DVSARGVDYP NVTLVVQMGV PTDREQYIHR
801: LGRTGRRGNE GSGILLLAPW EEYFLRSIKD LPITEATLPL IDLDTKRKVE KALAHVEVKD KELAYQAWLG YYNSNKFIGR DKYQLVSLAN EFSRSLGLNN
901: PPAVPKLVLR KMGLNNIPGL RSK

Best Arabidopsis Sequence Match ( AT5G63630.2 )
(BLAST)

001: MPLNFPLRIR FFAHSLSGTH LSYNTSSSVP LLFRIFSSGL NHFEFGSRIN FSTRPNRDQP EFERRIRDGG EIRASKSLIE DEEELSNWVS GFRTGSSRGI
101: LKSDDEDEED RSRGRNQEKR GIRNQVDSFR NKRYGGDRER GFNSRIQGKS SEASFRGRKE TSFSRDREDE KGLRKREDLR LEDESSDEDV KSLVMGDIGD
201: LLSEDDEEED QDYDFLKKKA VSAFGFDKEN VIEADKTRNA NDSYLTKTRF DHYPLSPLSL KAIKDAGYET MTVVQEATLP IILKGKDVLA KAKTGTGKTV
301: AFLLPSIEVV VKSPPTSPDN KRPPILALVI CPTRELANQA ATEANTLLKY HPSIGVQVVI GGTRLGLEQK RMQTNPCQIL VATPGRLKDH IENTPGFATR
401: LKGVKVLVLD EADHLLDMGF RKDIERIISA VPKERQTFLF SATVPEEVRQ ICLVALRRDH EFVNCVHEGT IETHQQVRQM HMIASLDRHF SLLYTLLREH
501: IMGNVDYKVI VFCTTAMVTK LVADLLGELN LNVREIHSRK PQSYRTRVSN EFRKSKGLIL VTSDVSARGV DYPDVTLVLQ VGLPKDREQY IHRLGRTGRK
601: GKEGEGILLL APWEEYFLSS LKDLPITKSP LPSIDPETVK KVQKALCHVE MRNKEAAYQA WLGYYNSQKM IGRDKDRLVE LANEFSRSMG LDNPPAIPKL
701: ILGKMGLKNV PGLRAK

Arabidopsis Description

RH31DEAD-box ATP-dependent RNA helicase 31 [Source:UniProtKB/Swiss-Prot;Acc:Q9FFQ1]
SUBAcon: [mitochondrion,plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.