Factsheet for Os07t0517000-01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
iPSORT:	mitochondrion
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
YLoc:	nucleus

nucleus: 23777608

msms PMID: 23777608 doi

H Mujahid, F Tan, J Zhang, BR Nallamilli, K Pendarvis, Z Peng

Department of Biochemistry, Molecular Biology, Entomology and Plant Pathology, Mississippi State University, Starkville, MS 39762, USA.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EER99450	Sorghum	nucleus	77.67	54.63
Zm00001d006497_P002	Maize	nucleus	76.91	53.88
TraesCS2B01G247500.1	Wheat	nucleus	76.53	52.56
TraesCS2D01G228000.1	Wheat	nucleus	76.53	52.49
TraesCS2A01G222000.1	Wheat	mitochondrion, nucleus	75.95	52.44
KRH14417	Soybean	cytosol, nucleus	49.81	49.43
GSMUA_Achr6P00390_001	Banana	cytosol, mitochondrion	49.62	35.42
KRH73730	Soybean	nucleus	50.19	35.25
CDY17287	Canola	nucleus	43.32	34.71
PGSC0003DMT400057202	Potato	nucleus	49.81	34.57
Solyc07g064520.2.1	Tomato	nucleus	49.05	34.08
AT5G54910.1	Thale cress	nucleus	45.23	32.07
Bra002946.1-P	Field mustard	nucleus	43.13	30.38
Os03t0802700-01	Rice	nucleus	20.04	17.8
Os06t0535100-00	Rice	nucleus	18.89	17.01
Os01t0164500-01	Rice	plastid	18.51	14.99
Os07t0660000-00	Rice	cytosol	12.4	14.61
Os01t0618500-01	Rice	nucleus	14.5	14.18
Os05t0110500-02	Rice	nucleus	15.84	14.04
Os03t0669000-01	Rice	cytosol, nucleus, plastid	12.4	13.77
Os01t0618400-01	Rice	nucleus, plasma membrane	13.93	12.29
Os08t0416100-01	Rice	nucleus	18.32	11.28
Os07t0633500-00	Rice	nucleus	8.59	11.17
Os12t0481100-01	Rice	nucleus	13.74	8.98
Os02t0826100-01	Rice	cytosol	13.55	8.75
Os06t0526600-01	Rice	mitochondrion	14.5	8.23
Os04t0510400-01	Rice	nucleus	12.98	8.17

Protein Annotations

Gene3D:3.40.50.300	MapMan:35.1	UniProt:A0A0P0X6B6	ProteinID:BAT01773.1	ncoils:Coil	InterPro:DUF4217
GO:GO:0000166	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0003824	GO:GO:0004004
GO:GO:0004386	GO:GO:0005488	GO:GO:0005524	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0005730	GO:GO:0005737	GO:GO:0006139	GO:GO:0008150	GO:GO:0008152
GO:GO:0009987	GO:GO:0010501	GO:GO:0016787	InterPro:Helicase_ATP-bd	InterPro:Helicase_C	InterPro:IPR001650
InterPro:IPR014001	EnsemblPlantsGene:Os07g0517000	EnsemblPlants:Os07t0517000-01	InterPro:P-loop_NTPase	PFAM:PF00271	PFAM:PF13959
PFscan:PS51192	PFscan:PS51194	PANTHER:PTHR24031	PANTHER:PTHR24031:SF54	SMART:SM00490	SMART:SM01178
SUPFAM:SSF52540	UniParc:UPI0000E12B40	SEG:seg	:	:	:

Description

RNA helicase 32DNA/RNA helicase, C-terminal domain containing protein. (Os07t0517000-01)

Coordinates

chr7:-:19926106..19928534

Molecular Weight (calculated)

59974.2 Da

IEP (calculated)

9.648

GRAVY (calculated)

-0.639

Length

524 amino acids

Sequence
(BLAST)

001: DNVVSQLPKV RQTLLFSATQ TKSVKDLARV SLKDPEYISV HEEATTATPD TLEQYAMIVP LEQKLNMLWS FIKRHLKSRI LVFLSSVKQV KFVYEVFKKL
101: RPGISLRCMH GRMKYEVQQA IVAEFKEGHS VLFSTDIFAR GLDIEDVDWV VQVDCPENIA LYIHRVGRTA RYNKRGKALI FLCPEEEKML EKLKAAESKI
201: PIHIKKPNTE QLQQISQNIA SVLVQYPNLQ QLGKRAFVTY LKSVYLQSDK EVFDLSRFSM ENFAAYAASL GLPVTPKIRF VSHKKNVPKK YMGDIDVKRM
301: KRSSKPEVIE INPQAKSNLI EDDGDYDILY PKEQQTDVNM ADGLDDVLYP KVSTADTNNE PEKVTQLGNK SVKKKKLKIN VHRPLGTRVK FDDEGHTIPP
401: FASIAEEVGS GDVIDKDKIS QRYAEMLREM QEHDKEDKLE HKRILREKKL QKKLKLKRKR NEEMDAGSEN SGSESDRDQR TASKGKKRYF NSDDEEGSKD
501: AAKDGDVLAQ QEALALKLLS KMHS

Best Arabidopsis Sequence Match ( AT5G54910.1 )
(BLAST)

001: MVKIKKTKGM RKQIRLNEVE EINLLKQWIE SQKPDSGFNP LSLRPLPKDS KIGKSEDGKN GTVFSRYAGV RKFAQLPISD KTKRGLKDAK YVDMTDVQSA
101: AIPHALCGRD ILGAARTGSG KTLAFVIPIL EKLHRERWSP EDGVGCIIIS PTRELAAQTF GVLNKVGKFH KFSAGLLIGG REGVDVEKER VHEMNILVCA
201: PGRLLQHMDE TPNFECPQLQ ILILDEADRV LDSAFKGQLD PIISQLPKHR QTLLFSATQT KKVKDLARLS LRDPEYISVH AEAVTATPTS LMQTVMIVPV
301: EKKLDMLWSF IKTHLNSRIL VFLSTKKQVK FVHEAFNKLR PGIPLKSLHG KMSQEKRMGV YSQFIERQSV LFCTDVLARG LDFDKAVDWV VQVDCPEDVA
401: SYIHRVGRTA RFYTQGKSLL FLTPSEEKMI EKLQEAKVPI KLIKANNQKL QEVSRLLAAL LVKYPDLQGV AQRAFITYLR SIHKRRDKEI FDVSKLSIEN
501: FSASLGLPMT PRIRFTNLKT KKKGVYESSI AMEIENAQEY EAPLVVKKDL LGEDLEEEDF ALKPRKEGKV VEKSTKEEEV LIPGNRVLKN KKLKINLHRP
601: FGSRVVLDEE GNSLAPLASV AAEAGTEVAL DEERMNDYYK KVGAEMRKAD IEDKKVDKER RREKRMKQKI KRKRGAMEDE EEEEEEDHDG SGSSDDETGR
701: NSKRAKKIVS DNEENGGKIN TDSLSVADLE EMALKFITQ

Arabidopsis Description

RH32DEAD-box ATP-dependent RNA helicase 32 [Source:UniProtKB/Swiss-Prot;Acc:Q9FFT9]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.