Factsheet for GSMUA_Achr6P00390_001

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, cytosol

Predictor Summary:

nucleus 2
cytosol 2
mitochondrion 3

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400057202	Potato	nucleus	64.17	62.38
Solyc07g064520.2.1	Tomato	nucleus	63.08	61.41
KRH73730	Soybean	nucleus	61.85	60.86
KRH14417	Soybean	cytosol, nucleus	41.42	57.58
CDY17287	Canola	nucleus	49.86	55.96
Bra002946.1-P	Field mustard	nucleus	56.4	55.65
EER99450	Sorghum	nucleus	55.99	55.17
AT5G54910.1	Thale cress	nucleus	55.45	55.07
Zm00001d006497_P002	Maize	nucleus	55.18	54.14
TraesCS2A01G222000.1	Wheat	mitochondrion, nucleus	54.5	52.7
TraesCS2B01G247500.1	Wheat	nucleus	54.5	52.42
TraesCS2D01G228000.1	Wheat	nucleus	54.5	52.36
Os07t0517000-01	Rice	nucleus	35.42	49.62
GSMUA_Achr10P...	Banana	cytosol	26.57	37.72
GSMUA_Achr7P07500_001	Banana	cytosol, nucleus, peroxisome	25.34	33.33
GSMUA_Achr3P14380_001	Banana	cytosol	17.44	28.64
GSMUA_Achr8P01870_001	Banana	cytosol	22.48	25.35
GSMUA_Achr7P18160_001	Banana	nucleus	19.35	24.32
GSMUA_Achr5P09910_001	Banana	nucleus	15.4	23.84
GSMUA_Achr8P04210_001	Banana	cytosol	21.12	20.95
GSMUA_Achr10P...	Banana	mitochondrion	19.89	19.29
GSMUA_Achr8P34380_001	Banana	cytosol	18.12	18.29
GSMUA_Achr8P12970_001	Banana	nucleus	19.07	18.28
GSMUA_Achr9P14580_001	Banana	nucleus	19.48	17.42
GSMUA_Achr5P10150_001	Banana	nucleus	17.17	16.36

Protein Annotations

Gene3D:3.40.50.300	MapMan:35.1	ncoils:Coil	InterPro:DEAD/DEAH_box_helicase_dom	InterPro:DUF4217	GO:GO:0000166
GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0003824	GO:GO:0004386	GO:GO:0005488
GO:GO:0005524	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005730
GO:GO:0016787	EnsemblPlantsGene:GSMUA_Achr6G00390_001	EnsemblPlants:GSMUA_Achr6P00390_001	EnsemblPlants:GSMUA_Achr6T00390_001	InterPro:Helicase_ATP-bd	InterPro:Helicase_C
InterPro:IPR001650	InterPro:IPR014001	UniProt:M0T2Y7	InterPro:P-loop_NTPase	PFAM:PF00270	PFAM:PF00271
PFAM:PF13959	ScanProsite:PS00039	PFscan:PS51192	PFscan:PS51194	PANTHER:PTHR24031	PANTHER:PTHR24031:SF54
InterPro:RNA-helicase_DEAD-box_CS	SMART:SM00487	SMART:SM00490	SMART:SM01178	SUPFAM:SSF52540	UniParc:UPI0002957D4F
SEG:seg	:	:	:	:	:

Description

DEAD-box ATP-dependent RNA helicase 32 [Source:GMGC_GENE;Acc:GSMUA_Achr6G00390_001]

Coordinates

chr6:-:279319..283959

Molecular Weight (calculated)

82371.4 Da

IEP (calculated)

9.559

GRAVY (calculated)

-0.475

Length

734 amino acids

Sequence
(BLAST)

001: MRRPKPKCSG ARKQRRLSEA QEIQLLDSWI EAGIPDPGTN PLAISPPPPD APIGRTKDGS FSPYAGVRFF RQLPISQRTK DGLAPKYVEM SDIQRASLPH
101: SLCGRDILGA AKTGSGKTLA FVIPVIEKLY RARWGPEDGV GSIIISPTKE LAGQLFEELK TVGKHHSLSA GLLIGGRKDV DAEKERVSSL NILVCTPGRL
201: LQHMDETANF ECSQLQILVL DEADRILDAG FKTELDAIIS QLPKRRQTLL FSATQTKSVK DLARLSLKDP EYISVHAESV TATPEQLTQL AIIVPLDQKL
301: NLLWSFIKAN LKSKILVFLS SCKQVKYVYE VFKKLRPGIP LKCLHGRMKQ NVRMATYLQF CEETSVLFST DVASRGLDFS AVDWVVQVDC PEDIPAYIHR
401: VGRTARFRNA GKSLLFLMPS EKEMFTKLRA VEPKIPIKLK KAKEPVSVSA LLSSLLVKFP SMQQLAQRAF VTYLKSIFLQ KDKDVFDVSK LPIEDFAVSL
501: GLSVTPKLRF LKRKSNVHMS STKTTEEVEA SDDKSKVHNI NSQATVRSDD VEDDVLLPKE SPSFEPEGDK AELSTRILKK KKLKINMHRP LGTRVKYDDD
601: GNVIPPLAAL ADKETGDGSI HLGTVKERYE KLREAMKVRD KEDKLLHRQR LRDKRTKEKL KLKKRKEEAE EGDTGDDHSD SDENEQRNPK RTKIYFDDDD
701: NDEVDDAKAA KKSDSVTLAE QEALALDLLR SMHS

Best Arabidopsis Sequence Match ( AT5G54910.1 )
(BLAST)

001: MVKIKKTKGM RKQIRLNEVE EINLLKQWIE SQKPDSGFNP LSLRPLPKDS KIGKSEDGKN GTVFSRYAGV RKFAQLPISD KTKRGLKDAK YVDMTDVQSA
101: AIPHALCGRD ILGAARTGSG KTLAFVIPIL EKLHRERWSP EDGVGCIIIS PTRELAAQTF GVLNKVGKFH KFSAGLLIGG REGVDVEKER VHEMNILVCA
201: PGRLLQHMDE TPNFECPQLQ ILILDEADRV LDSAFKGQLD PIISQLPKHR QTLLFSATQT KKVKDLARLS LRDPEYISVH AEAVTATPTS LMQTVMIVPV
301: EKKLDMLWSF IKTHLNSRIL VFLSTKKQVK FVHEAFNKLR PGIPLKSLHG KMSQEKRMGV YSQFIERQSV LFCTDVLARG LDFDKAVDWV VQVDCPEDVA
401: SYIHRVGRTA RFYTQGKSLL FLTPSEEKMI EKLQEAKVPI KLIKANNQKL QEVSRLLAAL LVKYPDLQGV AQRAFITYLR SIHKRRDKEI FDVSKLSIEN
501: FSASLGLPMT PRIRFTNLKT KKKGVYESSI AMEIENAQEY EAPLVVKKDL LGEDLEEEDF ALKPRKEGKV VEKSTKEEEV LIPGNRVLKN KKLKINLHRP
601: FGSRVVLDEE GNSLAPLASV AAEAGTEVAL DEERMNDYYK KVGAEMRKAD IEDKKVDKER RREKRMKQKI KRKRGAMEDE EEEEEEDHDG SGSSDDETGR
701: NSKRAKKIVS DNEENGGKIN TDSLSVADLE EMALKFITQ

Arabidopsis Description

RH32DEAD-box ATP-dependent RNA helicase 32 [Source:UniProtKB/Swiss-Prot;Acc:Q9FFT9]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.