Factsheet for AT5G65900.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra024428.1-P	Field mustard	nucleus	75.99	81.39
CDY36514	Canola	nucleus	74.72	81.13
CDY08740	Canola	nucleus	75.99	80.98
GSMUA_Achr10P...	Banana	cytosol	49.76	60.93
VIT_17s0000g04310.t01	Wine grape	cytosol	52.61	60.55
KRH62970	Soybean	nucleus	51.66	60.33
PGSC0003DMT400063252	Potato	nucleus	53.71	60.07
KRH54795	Soybean	nucleus	50.87	58.87
AT3G18600.1	Thale cress	nucleus	52.76	58.8
Solyc03g114370.2.1	Tomato	nucleus	52.45	58.66
KRH56711	Soybean	nucleus	52.76	58.39
KRH03838	Soybean	nucleus	52.76	58.09
HORVU4Hr1G000640.1	Barley	cytosol, nucleus	42.65	54.33
GSMUA_Achr7P07500_001	Banana	cytosol, nucleus, peroxisome	47.39	53.76
TraesCS5A01G114200.1	Wheat	nucleus	48.66	53.1
TraesCS5D01G127000.1	Wheat	nucleus	48.34	52.76
TraesCS5B01G120400.1	Wheat	nucleus	48.34	52.76
Os03t0802700-01	Rice	nucleus	48.82	52.37
TraesCS6D01G292400.1	Wheat	nucleus	45.5	52.08
TraesCS6A01G312900.1	Wheat	nucleus	45.18	51.72
EER90714	Sorghum	nucleus	50.08	50.88
TraesCS6B01G342900.1	Wheat	nucleus	43.76	50.73
TraesCS5A01G042300.1	Wheat	nucleus	45.97	50.52
Zm00001d000431_P001	Maize	plastid	38.07	49.59
TraesCS6A01G356000.1	Wheat	nucleus	44.87	49.56
TraesCS5D01G050600.1	Wheat	nucleus	43.76	49.55
Os06t0535100-00	Rice	nucleus	45.34	49.31
KXG37786	Sorghum	nucleus	34.76	48.57
Zm00001d013056_P001	Maize	nucleus	49.92	48.17
OQU76528	Sorghum	nucleus	45.5	48.08
Zm00001d023501_P001	Maize	nucleus	45.34	47.6
HORVU5Hr1G010160.3	Barley	cytosol	45.18	47.51
TraesCS7B01G213800.1	Wheat	nucleus	22.27	45.63
TraesCS7D01G309800.1	Wheat	nucleus	21.96	44.55
TraesCS7A01G313300.1	Wheat	nucleus	21.48	44.01
AT5G60990.1	Thale cress	nucleus	24.49	33.99
AT2G40700.1	Thale cress	nucleus	28.44	29.51
AT5G08620.1	Thale cress	nucleus	24.33	27.35
AT1G16280.1	Thale cress	nucleus	20.85	26.88
AT5G54910.1	Thale cress	nucleus	31.12	26.66
AT5G05450.1	Thale cress	nucleus	24.33	25.97
AT1G71370.1	Thale cress	nucleus	22.12	25.09
AT1G71280.1	Thale cress	nucleus	17.69	24.09
AT5G63630.2	Thale cress	mitochondrion, plastid	24.8	21.93
AT5G08610.1	Thale cress	mitochondrion, plastid	25.59	19.06
AT1G63250.1	Thale cress	mitochondrion	24.01	19.05
AT2G07750.1	Thale cress	plastid	24.17	18.11
AT4G16630.1	Thale cress	nucleus	21.64	17.36
AT1G77030.1	Thale cress	nucleus	21.33	15.98
AT3G16840.2	Thale cress	nucleus	20.7	15.84

Protein Annotations

Gene3D:3.40.50.300	MapMan:35.1	EntrezGene:836719	ProteinID:AED98121.1	EMBL:AJ012745	ArrayExpress:AT5G65900
EnsemblPlantsGene:AT5G65900	RefSeq:AT5G65900	TAIR:AT5G65900	RefSeq:AT5G65900-TAIR-G	EnsemblPlants:AT5G65900.1	TAIR:AT5G65900.1
EMBL:AY059930	Unigene:At.66704	ProteinID:BAB11137.1	EMBL:BT001188	ProteinID:CAA16673.1	ncoils:Coil
InterPro:DEAD/DEAH_box_helicase_dom	InterPro:DUF4217	GO:GO:0000166	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723
GO:GO:0003824	GO:GO:0004004	GO:GO:0004386	GO:GO:0005488	GO:GO:0005524	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005730	GO:GO:0005737	GO:GO:0006139
GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0010501	GO:GO:0016787	InterPro:Helicase_ATP-bd
InterPro:Helicase_C	InterPro:IPR001650	InterPro:IPR014001	InterPro:IPR014014	RefSeq:NP_201391.1	InterPro:P-loop_NTPase
PFAM:PF00270	PFAM:PF00271	PFAM:PF13959	PO:PO:0000013	PO:PO:0000037	PO:PO:0000230
PO:PO:0000293	PO:PO:0001054	PO:PO:0001078	PO:PO:0001081	PO:PO:0001185	PO:PO:0004507
PO:PO:0007064	PO:PO:0007095	PO:PO:0007098	PO:PO:0007103	PO:PO:0007115	PO:PO:0007123
PO:PO:0007611	PO:PO:0007616	PO:PO:0008019	PO:PO:0009005	PO:PO:0009006	PO:PO:0009009
PO:PO:0009010	PO:PO:0009025	PO:PO:0009029	PO:PO:0009030	PO:PO:0009031	PO:PO:0009032
PO:PO:0009046	PO:PO:0009047	PO:PO:0009052	PO:PO:0020030	PO:PO:0020038	PO:PO:0020090
PO:PO:0020100	PO:PO:0020137	PO:PO:0025022	PO:PO:0025281	ScanProsite:PS00039	PFscan:PS51192
PFscan:PS51194	PFscan:PS51195	PANTHER:PTHR24031	PANTHER:PTHR24031:SF305	UniProt:Q9SB89	InterPro:RNA-helicase_DEAD-box_CS
InterPro:RNA_helicase_DEAD_Q_motif	SMART:SM00487	SMART:SM00490	SMART:SM01178	SUPFAM:SSF52540	UniParc:UPI00000AC1FC
SEG:seg	:	:	:	:	:

Description

RH27DEAD-box ATP-dependent RNA helicase 27 [Source:UniProtKB/Swiss-Prot;Acc:Q9SB89]

Coordinates

chr5:+:26358161..26361443

Molecular Weight (calculated)

72056.4 Da

IEP (calculated)

9.304

GRAVY (calculated)

-0.770

Length

633 amino acids

Sequence
(BLAST)

001: MANLDMEQHS SENEEIKKKK HKKRARDEAK KLKQPAMEEE PDHEDGDAKE NNALIDEEPK KKKKKKNKKR GDTDDGEDEA VAEEEPKKKK KKNKKLQQRG
101: DTNDEEDEVI AEEEEPKKKK KKQRKDTEAK SEEEEVEDKE EEKKLEETSI MTNKTFESLS LSDNTYKSIK EMGFARMTQI QAKAIPPLMM GEDVLGAART
201: GSGKTLAFLI PAVELLYRVK FTPRNGTGVL VICPTRELAI QSYGVAKELL KYHSQTVGKV IGGEKRKTEA EILAKGVNLL VATPGRLLDH LENTNGFIFK
301: NLKFLVMDEA DRILEQNFEE DLKKILNLLP KTRQTSLFSA TQSAKVEDLA RVSLTSPVYI DVDEGRKEVT NEGLEQGYCV VPSAMRLLFL LTFLKRFQGK
401: KKIMVFFSTC KSTKFHAELF RYIKFDCLEI RGGIDQNKRT PTFLQFIKAE TGILLCTNVA ARGLDFPHVD WIVQYDPPDN PTDYIHRVGR TARGEGAKGK
501: ALLVLTPQEL KFIQYLKAAK IPVEEHEFEE KKLLDVKPFV ENLISENYAL KESAKEAYKT YISGYDSHSM KDVFNVHQLN LTEVATSFGF SDPPKVALKI
601: DRGGYRSKRE PVNKFKRGRG GGRPGGKSKF ERY

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.