Factsheet for AT4G16630.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY40519	Canola	nucleus	82.38	85.75
CDY50846	Canola	nucleus	88.09	82.84
CDY53643	Canola	nucleus	88.47	82.7
Bra040743.1-P	Field mustard	nucleus	88.59	79.98
VIT_18s0001g14540.t01	Wine grape	nucleus	64.26	69.26
CDY32273	Canola	nucleus	79.72	68.89
Solyc04g081580.2.1	Tomato	nucleus	64.39	68.28
PGSC0003DMT400025551	Potato	nucleus	64.39	68.19
Bra038492.1-P	Field mustard	nucleus	78.45	68.17
KRH37947	Soybean	plastid	50.7	67.91
KRH37970	Soybean	cytosol	27.5	67.81
KRH46113	Soybean	nucleus	64.64	67.37
KRG98832	Soybean	nucleus	64.39	66.93
GSMUA_Achr8P12970_001	Banana	nucleus	59.82	61.62
TraesCS5D01G385400.1	Wheat	nucleus	59.82	60.67
TraesCS5A01G375900.1	Wheat	nucleus	59.7	60.54
Zm00001d021127_P001	Maize	nucleus, plasma membrane	58.94	60.39
TraesCS5B01G378100.1	Wheat	nucleus	59.57	60.33
KXG35997	Sorghum	nucleus	60.08	59.7
Os12t0481100-01	Rice	nucleus	60.33	59.35
Zm00001d006113_P001	Maize	nucleus	59.32	59.32
HORVU5Hr1G093160.3	Barley	nucleus	59.7	56.68
AT1G16280.1	Thale cress	nucleus	19.65	31.57
AT5G60990.1	Thale cress	nucleus	18.12	31.36
AT5G08620.1	Thale cress	nucleus	17.87	25.04
AT1G71370.1	Thale cress	nucleus	17.36	24.55
AT3G18600.1	Thale cress	nucleus	17.62	24.47
AT2G40700.1	Thale cress	nucleus	18.5	23.93
AT1G71280.1	Thale cress	nucleus	14.07	23.87
AT5G05450.1	Thale cress	nucleus	17.49	23.27
AT5G63630.2	Thale cress	mitochondrion, plastid	19.65	21.65
AT5G65900.1	Thale cress	nucleus	17.36	21.64
AT5G54910.1	Thale cress	nucleus	18.63	19.89
AT1G77030.1	Thale cress	nucleus	21.04	19.64
AT3G16840.2	Thale cress	nucleus	20.28	19.35
AT5G08610.1	Thale cress	mitochondrion, plastid	19.26	17.88
AT1G63250.1	Thale cress	mitochondrion	17.49	17.29
AT2G07750.1	Thale cress	plastid	17.49	16.33

Protein Annotations

Gene3D:3.40.50.300	MapMan:35.1	EntrezGene:827364	UniProt:A0A178V246	ProteinID:AEE83778.1	EMBL:AJ010475
EMBL:AK228353	ArrayExpress:AT4G16630	EnsemblPlantsGene:AT4G16630	RefSeq:AT4G16630	TAIR:AT4G16630	RefSeq:AT4G16630-TAIR-G
EnsemblPlants:AT4G16630.1	TAIR:AT4G16630.1	Unigene:At.49	ProteinID:CAB10438.1	ProteinID:CAB78705.1	ncoils:Coil
InterPro:DEAD/DEAH_box_helicase_dom	GO:GO:0000166	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0003824
GO:GO:0004004	GO:GO:0004386	GO:GO:0005488	GO:GO:0005524	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0005730	GO:GO:0005737	GO:GO:0006139	GO:GO:0008150
GO:GO:0008152	GO:GO:0009987	GO:GO:0010501	GO:GO:0016787	InterPro:Helicase_ATP-bd	InterPro:Helicase_C
InterPro:IPR001650	InterPro:IPR014001	InterPro:IPR014014	RefSeq:NP_193396.3	ProteinID:OAP00440.1	InterPro:P-loop_NTPase
PFAM:PF00270	PFAM:PF00271	PO:PO:0000005	PO:PO:0000293	ScanProsite:PS00039	PFscan:PS51192
PFscan:PS51194	PFscan:PS51195	PANTHER:PTHR24031	PANTHER:PTHR24031:SF541	UniProt:Q9ZRZ8	InterPro:RNA-helicase_DEAD-box_CS
InterPro:RNA_helicase_DEAD_Q_motif	SMART:SM00487	SMART:SM00490	SUPFAM:SSF52540	UniParc:UPI00000A9135	SEG:seg

Description

RH28DEAD-box ATP-dependent RNA helicase 28 [Source:UniProtKB/Swiss-Prot;Acc:Q9ZRZ8]

Coordinates

chr4:-:9361952..9366748

Molecular Weight (calculated)

89359.6 Da

IEP (calculated)

5.326

GRAVY (calculated)

-0.807

Length

789 amino acids

Sequence
(BLAST)

001: MPSSFFFEDA SDDELELIRN QEDSSEEDVK EGEAEEHEAG EDEDGEEEYE EEDDDEEEED EKRKRDADAQ SPWDFASYSS SVGEEHARRH TTSIDEKISK
101: AIQHRPVPIS INEEEEEEEE EEDASDAETD KQEEYLSEDD EAAEYKPEDA TPKPFFSTVD GVSFHADTFM ELNLSRPLLR ACETLGYKKP TPIQAACIPL
201: ALTGRDLCAS AITGSGKTAA FALPTLERLL FRPKRVFATR VLILTPTREL AVQIHSMIQN LAQFTDIKCG LIVGGLSVRE QEVVLRSMPD IVVATPGRMI
301: DHLRNSMSVD LDDLAVLILD EADRLLQTGF ATEITELVRL CPKRRQTMLF SATMTEEVKE LVKLSLNKPL RLSADPSARR PPGLTEEVVR IRRTREANQE
401: AVLLSLCTRT FKSKVIIFSG TKQAAHRLKI LFGLAGLKAA ELHGNLTQAQ RLDSLELFRK QEVDFLIATD VAARGLDIIG VQTVINYACP REIDSYVHRV
501: GRTARAGREG YAVTFVTDSD RSLLKVIAKK VGSKLKSRVI PEQSIVKWSQ IIDEMEDQYS AVISAERDER ALRKAEMEFA KAENMLEHRD EIYARPKRTW
601: FMTEKEKKLV AQAEKDSAGN PAGGELVSAD RAEDLKMKEK RKREREKNLP RKKRRKLEAA REMLEDNEGE EEEEDEEGDE KRGRSRGKDK KKQETDKKGL
701: TLKDLGYMRA KAVKAKQRAI DSGKMERPKP DKKQSRSKPR NQPRGEEMKD LFKSDMGEKK QGRGGAAAAA KPRTKSKNSF KSKARYKRR

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.