Factsheet for AT3G16840.2

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	cytosol
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra021205.1-P	Field mustard	mitochondrion, nucleus, plastid	63.72	83.78
CDY52719	Canola	nucleus, plastid	77.03	76.84
CDY34979	Canola	nucleus, plastid	76.78	76.32
PGSC0003DMT400003801	Potato	nucleus	58.04	60.23
VIT_05s0049g02360.t01	Wine grape	nucleus	57.07	59.9
Solyc09g090740.2.1	Tomato	nucleus	57.8	59.82
KRH48208	Soybean	nucleus	56.11	57.28
KRH65117	Soybean	plastid	53.33	53.52
GSMUA_Achr5P10150_001	Banana	nucleus	47.76	51.3
OQU81941	Sorghum	nucleus	50.91	50.0
TraesCS2B01G384300.1	Wheat	nucleus	49.94	49.46
TraesCS2D01G363700.1	Wheat	nucleus	49.94	49.4
Zm00001d003031_P002	Maize	nucleus	50.3	49.17
Os04t0510400-01	Rice	nucleus	49.33	49.04
TraesCS2A01G366700.1	Wheat	nucleus	49.94	48.93
HORVU2Hr1G088480.2	Barley	nucleus, plastid	50.18	47.81
AT5G60990.1	Thale cress	nucleus	17.41	31.58
AT1G16280.1	Thale cress	nucleus	16.57	27.9
AT5G08620.1	Thale cress	nucleus	16.08	23.62
AT3G18600.1	Thale cress	nucleus	16.08	23.42
AT2G40700.1	Thale cress	nucleus	16.2	21.97
AT1G71370.1	Thale cress	nucleus	14.75	21.86
AT1G71280.1	Thale cress	nucleus	11.97	21.29
AT5G05450.1	Thale cress	nucleus	15.24	21.25
AT5G65900.1	Thale cress	nucleus	15.84	20.7
AT5G63630.2	Thale cress	mitochondrion, plastid	17.65	20.39
AT4G16630.1	Thale cress	nucleus	19.35	20.28
AT1G63250.1	Thale cress	mitochondrion	16.93	17.54
AT5G08610.1	Thale cress	mitochondrion, plastid	18.02	17.53
AT5G54910.1	Thale cress	nucleus	15.48	17.32
AT2G07750.1	Thale cress	plastid	16.93	16.57
AT1G77030.1	Thale cress	nucleus	16.93	16.57

Protein Annotations

Gene3D:3.40.50.300	MapMan:35.1	EntrezGene:820937	UniProt:A0A178VJW0	UniProt:A0A1I9LQ87	ProteinID:AEE75872.1
EMBL:AJ010465	EMBL:AK318706	ProteinID:ANM64745.1	ArrayExpress:AT3G16840	EnsemblPlantsGene:AT3G16840	RefSeq:AT3G16840
TAIR:AT3G16840	RefSeq:AT3G16840-TAIR-G	EnsemblPlants:AT3G16840.2	EMBL:AY045669	EMBL:AY054475	Unigene:At.5723
ProteinID:BAA95778.1	ncoils:Coil	InterPro:DEAD/DEAH_box_helicase_dom	GO:GO:0000166	GO:GO:0003674	GO:GO:0003676
GO:GO:0003723	GO:GO:0003824	GO:GO:0004004	GO:GO:0004386	GO:GO:0005488	GO:GO:0005524
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005730	GO:GO:0005737
GO:GO:0006139	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0010501	GO:GO:0016787
InterPro:Helicase_ATP-bd	InterPro:Helicase_C	InterPro:IPR001650	InterPro:IPR014001	InterPro:IPR014014	RefSeq:NP_001326753.1
RefSeq:NP_188307.3	ProteinID:OAP06116.1	ProteinID:OAP06117.1	InterPro:P-loop_NTPase	PFAM:PF00270	PFAM:PF00271
ScanProsite:PS00039	PFscan:PS51192	PFscan:PS51194	PFscan:PS51195	PANTHER:PTHR24031	PANTHER:PTHR24031:SF91
InterPro:RNA-helicase_DEAD-box_CS	InterPro:RNA_helicase_DEAD_Q_motif	SMART:SM00487	SMART:SM00490	SUPFAM:SSF52540	UniParc:UPI0007DFF2CA
SEG:seg	:	:	:	:	:

Description

P-loop containing nucleoside triphosphate hydrolases superfamily protein [Source:UniProtKB/TrEMBL;Acc:A0A178VJW0]

Coordinates

chr3:-:5737886..5743212

Molecular Weight (calculated)

94062.4 Da

IEP (calculated)

8.664

GRAVY (calculated)

-0.732

Length

827 amino acids

Sequence
(BLAST)

001: MVTGDKESSL MKKRNKRSHK RKREEDFERI DSLPWSSSIP IGEDDEGESF STLFSGSGQL DGGFLSLEEI DEADYHLTLP TIESEITERK QSPEDDDDTN
101: ETVDEMIEGE EAEEDGEGRD DEDDEDDEET RKKKEKKAKR NKEKKKEKKK KKQKKINEAA KNQDASAAVS CDGDDTVEEQ VEEEEIPPEF SAWSSMRLHP
201: LLMKSIYRLD FKEPTKIQKA CFNVAAYQGK DVIGAAETGS GKTLAFGLPI LQRLLDEREK VGKLYALKGE EAQKYAADGY LRALIITPTR ELALQVTEHL
301: ENAAKNLSVK VVPIVGGMFS EKQERRLKEK PEIVVATPGR LWELMSAGEK HLVELHSLSF FVLDEADRMV ERGHFRELQS ILDLLPVTDK PNEGKTQTVK
401: SNDTVLNVPK KKRQTFVFSA TIALSSDFRK KLKRGSSKSK QSSSGEVNSI EVLSERAGMR DNVAIIDLTT TSILAPKIEE SFIKCEEKEK DAYLYYILSV
501: HGQGRTIVFC TSVTDLRHIS GLLKILGLDV CTLFSEMKQR ARLKSIDRFR ASENGILIAT DLVARGIDIK NVRTIIHYKL PHSAEVYVHR CGRTARAFAD
601: GCSIALIEPN ETSKFYTLCK SFSMESVKIF PLDNSYMPAV RKRLYLARQI YEIERKGSRE NADRTWLKKH AESMELELDD EESEEERVDN VRQRKATSAR
701: LNKLKEELST LLSHPMQPKK FSGRYFAGVG VSTLMQNQFV ELKKQKQAQM QIGGDIKRRK LVVINQNCIE PLQALRAGGN EMLKMKGQSA EKRRDIASLK
801: KKRKEEKIGR RDQRRNQKKQ RKLMASS

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.