Factsheet for AT1G77030.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX79187	Canola	cytosol	85.21	84.91
CDX68066	Canola	cytosol	85.56	84.86
Bra003691.1-P	Field mustard	cytosol	85.56	84.86
KRH64859	Soybean	nucleus	66.15	71.94
KRH09570	Soybean	nucleus	65.68	71.43
Solyc10g009070.2.1	Tomato	nucleus	64.85	69.81
GSMUA_Achr9P14580_001	Banana	nucleus	62.13	63.95
Zm00001d032317_P001	Maize	nucleus	33.37	57.67
Zm00001d050315_P001	Maize	nucleus	56.69	57.02
OQU80427	Sorghum	nucleus	56.69	56.15
TraesCS4D01G337100.1	Wheat	nucleus	55.38	54.99
TraesCS5A01G510500.1	Wheat	nucleus	55.27	54.81
Os08t0416100-01	Rice	nucleus	55.15	54.76
TraesCS4B01G341100.1	Wheat	plastid	55.27	54.68
HORVU4Hr1G083970.6	Barley	nucleus	45.8	44.33
AT5G60990.1	Thale cress	nucleus	15.98	29.61
AT1G16280.1	Thale cress	nucleus	16.45	28.31
AT1G71370.1	Thale cress	nucleus	16.45	24.91
AT3G18600.1	Thale cress	nucleus	16.69	24.82
AT1G71280.1	Thale cress	nucleus	13.25	24.09
AT2G40700.1	Thale cress	nucleus	16.57	22.95
AT5G05450.1	Thale cress	nucleus	15.98	22.77
AT5G65900.1	Thale cress	nucleus	15.98	21.33
AT4G16630.1	Thale cress	nucleus	19.64	21.04
AT5G08620.1	Thale cress	nucleus	13.96	20.96
AT5G54910.1	Thale cress	nucleus	17.75	20.3
AT5G63630.2	Thale cress	mitochondrion, plastid	14.67	17.32
AT3G16840.2	Thale cress	nucleus	16.57	16.93
AT5G08610.1	Thale cress	mitochondrion, plastid	14.08	14.0
AT1G63250.1	Thale cress	mitochondrion	13.14	13.91
AT2G07750.1	Thale cress	plastid	12.9	12.9

Protein Annotations

Gene3D:3.40.50.300	MapMan:35.1	EntrezGene:844039	UniProt:A0A178WHB7	ProteinID:AAC00620.1	ProteinID:AEE35927.1
ArrayExpress:AT1G77030	EnsemblPlantsGene:AT1G77030	RefSeq:AT1G77030	TAIR:AT1G77030	RefSeq:AT1G77030-TAIR-G	EnsemblPlants:AT1G77030.1
TAIR:AT1G77030.1	Unigene:At.52542	InterPro:DBP10_C	InterPro:DDX54/DBP10	InterPro:DEAD/DEAH_box_helicase_dom	GO:GO:0000166
GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0003824	GO:GO:0004004	GO:GO:0004386
GO:GO:0005488	GO:GO:0005524	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0005730	GO:GO:0005737	GO:GO:0006139	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987
GO:GO:0010501	GO:GO:0016787	InterPro:Helicase_ATP-bd	InterPro:Helicase_C	InterPro:IPR001650	InterPro:IPR014001
InterPro:IPR014014	RefSeq:NP_177829.5	UniProt:O49289	ProteinID:OAP17730.1	InterPro:P-loop_NTPase	PFAM:PD024971
PFAM:PF00270	PFAM:PF00271	PFAM:PF08147	PO:PO:0000293	PFscan:PS51192	PFscan:PS51194
PFscan:PS51195	PANTHER:PTHR24031	PANTHER:PTHR24031:SF292	InterPro:RNA_helicase_DEAD_Q_motif	SMART:SM00487	SMART:SM00490
SMART:SM01123	SUPFAM:SSF52540	UniParc:UPI000009D4A9	SEG:seg	:	:

Description

RH29Putative DEAD-box ATP-dependent RNA helicase 29 [Source:UniProtKB/Swiss-Prot;Acc:O49289]

Coordinates

chr1:-:28947743..28951655

Molecular Weight (calculated)

93509.0 Da

IEP (calculated)

10.592

GRAVY (calculated)

-0.643

Length

845 amino acids

Sequence
(BLAST)

001: MVEGKGFLVS SVTELHRKEK QKKKGKSGGF ESLNLGPNVF NAIKKKGYKV PTPIQRKTMP LILSGVDVVA MARTGSGKTA AFLIPMLEKL KQHVPQGGVR
101: ALILSPTRDL AEQTLKFTKE LGKFTDLRVS LLVGGDSMED QFEELTKGPD VIIATPGRLM HLLSEVDDMT LRTVEYVVFD EADSLFGMGF AEQLHQILTQ
201: LSENRQTLLF SATLPSALAE FAKAGLREPQ LVRLDVENKI SPDLKLSFLT VRPEEKYSAL LYLVREHISS DQQTLIFVST KHHVEFVNSL FKLENIEPSV
301: CYGDMDQDAR KIHVSRFRAR KTMLLIVTDI AARGIDIPLL DNVINWDFPP RPKIFVHRVG RAARAGRTGC AYSFVTPEDM PYMLDLHLFL SKPVRPAPTE
401: DEVLKNMEEV MTKTSQAIDS GVTVYGRFPQ KTIDLIFNRT REMIDSSAEL DSLERTSTKA FRLYSKTKPS PSKESIRRAK DLPREGLHPI FRSIIETGEL
501: EAMSFFQKIK NFRPKQTILE AEGEVAKSKH VKGPAGQWVD VMKKKRAIHE EIINTRHQQN QKTSNNHLEM EAEPTTSFVD GTVEGSKVSG KKRKAQETFK
601: DDEFFISSIP VNHHSEAGLS LRGNEGFGSN RLDAAVLDLV ADDGQGIKQQ QSNYHWDKKG KKYIKLNNGD RVTASGKIKT ESGAKATAKK TGIYKRWQER
701: SHKKVSRDSG DADETTRMSG RGGRDGKRRQ GSVPNAHVRS EIKDLDQVRK ERQQKANKVS YLQSKRGGRG GRGGARGGRG GGARGGRGGS RDFGGGGRDF
801: GSSSDRGGRS GGRDFGGRRG GASTSSRGGK RGGGRGGGGK RGRGR

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.