Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 1
| Predictors | GFP | MS/MS | Papers | ||||||
|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Zm00001d032317_P001 | Maize | nucleus | 45.02 | 80.37 |
| TraesCS5A01G510500.1 | Wheat | nucleus | 76.06 | 77.93 |
| TraesCS4D01G337100.1 | Wheat | nucleus | 75.72 | 77.67 |
| TraesCS4B01G341100.1 | Wheat | plastid | 75.83 | 77.52 |
| Os08t0416100-01 | Rice | nucleus | 62.66 | 64.28 |
| Zm00001d050315_P001 | Maize | nucleus | 60.14 | 62.5 |
| OQU80427 | Sorghum | nucleus | 60.94 | 62.37 |
| Solyc10g009070.2.1 | Tomato | nucleus | 47.42 | 52.74 |
| KRH64859 | Soybean | nucleus | 46.74 | 52.51 |
| KRH09570 | Soybean | nucleus | 46.39 | 52.12 |
| GSMUA_Achr9P14580_001 | Banana | nucleus | 48.8 | 51.89 |
| Bra003691.1-P | Field mustard | cytosol | 44.79 | 45.89 |
| CDX68066 | Canola | cytosol | 44.79 | 45.89 |
| AT1G77030.1 | Thale cress | nucleus | 44.33 | 45.8 |
| CDX79187 | Canola | cytosol | 44.33 | 45.64 |
| HORVU2Hr1G028120.2 | Barley | plastid | 16.72 | 29.38 |
| HORVU2Hr1G022490.2 | Barley | nucleus | 15.12 | 26.77 |
| HORVU5Hr1G010160.3 | Barley | cytosol | 11.91 | 17.28 |
| HORVU4Hr1G000640.1 | Barley | cytosol, nucleus | 9.74 | 17.1 |
| HORVU6Hr1G020570.1 | Barley | plastid | 11.0 | 16.96 |
| HORVU1Hr1G004510.5 | Barley | plastid | 12.37 | 16.36 |
| HORVU3Hr1G054730.1 | Barley | cytosol, mitochondrion, nucleus, plastid | 9.39 | 15.24 |
| HORVU3Hr1G018130.7 | Barley | plastid | 11.23 | 14.48 |
| HORVU5Hr1G093160.3 | Barley | nucleus | 13.29 | 13.96 |
| HORVU6Hr1G093300.7 | Barley | cytosol, nucleus | 9.62 | 11.05 |
| HORVU2Hr1G088480.2 | Barley | nucleus, plastid | 10.31 | 10.37 |
Protein Annotations
| Gene3D:3.40.50.300 | MapMan:35.1 | UniProt:A0A287PY35 | InterPro:DBP10_C | InterPro:DDX54/DBP10 | InterPro:DEAD/DEAH_box_helicase_dom |
| GO:GO:0000166 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003723 | GO:GO:0003824 | GO:GO:0004004 |
| GO:GO:0005488 | GO:GO:0005524 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 |
| GO:GO:0016787 | EnsemblPlantsGene:HORVU4Hr1G083970 | EnsemblPlants:HORVU4Hr1G083970.6 | InterPro:Helicase_ATP-bd | InterPro:Helicase_C | InterPro:IPR001650 |
| InterPro:IPR014001 | InterPro:P-loop_NTPase | PFAM:PD024971 | PFAM:PF00270 | PFAM:PF00271 | PFscan:PS51192 |
| PFscan:PS51194 | PANTHER:PTHR24031 | PANTHER:PTHR24031:SF292 | SMART:SM00490 | SMART:SM01123 | SUPFAM:SSF52540 |
| UniParc:UPI000B46CE1C | SEG:seg | : | : | : | : |
Description
No Description!
Coordinates
chrchr4H:-:627012012..627020858
Molecular Weight (calculated)
77733.8 Da
IEP (calculated)
10.275
GRAVY (calculated)
-0.540
Length
873 amino acids
Sequence
(BLAST)
(BLAST)
001: XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX
101: XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXF EVLADNPDIV IATPGRFVHI
201: LSMVDDLSLR SVEYVVFDEA DSLFSLGFAE QLHKILHKLS DTRQTLLFSA TMPKALAEFA KAGLRDPQVI RLDLDKKISP DLKLAFFTLR QEEKLAALLY
301: LVREHISSEE QTMIFVSTKY HVEFLNILFR EEGLEASLSY GAMDQEARTI HISRFRARKT MLLIVTDVAA RGLDIPLLDN VVNWDFPAKP KLFVHRVGRV
401: ARQGRTGTAF TFVTSEDMPF LLDLHLFLSK PLRPAPTEDE LLKDMDGMNL KIDQSLADGE TIYGRFPQTI LDLCSDGVKE VISGCTDLIA LEKPCANAFR
501: LYLKTRAMPS KESVRRAKDL PREGLHPIFR DVLRPDEISA IAFSDRLKSF RPKQTILEAE GEAARSRSSK GSSQWLDVMK KKREVHEGII NLVHQKNSGD
601: LATKEEETEN ISNWEKKEVC GKKRKSQSFR DEDHYISSVP QNQHSEAGLS VKGNEGFVQD RLDAAVLDLV DDETSGMQAQ KTRYHWMKNK FVKLNNGDRV
701: TSTGKIKTES SAKLKASKDI YKKWQQKSHR AISSGGNDGA EGGTSTPAGY QRGGNRRYPA AGRGRSSIPN ADVPSEIRNP QQMRKGRQEK AMQDLRWNDK
801: SAKDGKFPGK FQKNRRPNGS GRDDKFQDSR SQKNRRPEGK GKGKGKGKGG GKGNAKGFGK GKGKGNPKGR GAR
101: XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXF EVLADNPDIV IATPGRFVHI
201: LSMVDDLSLR SVEYVVFDEA DSLFSLGFAE QLHKILHKLS DTRQTLLFSA TMPKALAEFA KAGLRDPQVI RLDLDKKISP DLKLAFFTLR QEEKLAALLY
301: LVREHISSEE QTMIFVSTKY HVEFLNILFR EEGLEASLSY GAMDQEARTI HISRFRARKT MLLIVTDVAA RGLDIPLLDN VVNWDFPAKP KLFVHRVGRV
401: ARQGRTGTAF TFVTSEDMPF LLDLHLFLSK PLRPAPTEDE LLKDMDGMNL KIDQSLADGE TIYGRFPQTI LDLCSDGVKE VISGCTDLIA LEKPCANAFR
501: LYLKTRAMPS KESVRRAKDL PREGLHPIFR DVLRPDEISA IAFSDRLKSF RPKQTILEAE GEAARSRSSK GSSQWLDVMK KKREVHEGII NLVHQKNSGD
601: LATKEEETEN ISNWEKKEVC GKKRKSQSFR DEDHYISSVP QNQHSEAGLS VKGNEGFVQD RLDAAVLDLV DDETSGMQAQ KTRYHWMKNK FVKLNNGDRV
701: TSTGKIKTES SAKLKASKDI YKKWQQKSHR AISSGGNDGA EGGTSTPAGY QRGGNRRYPA AGRGRSSIPN ADVPSEIRNP QQMRKGRQEK AMQDLRWNDK
801: SAKDGKFPGK FQKNRRPNGS GRDDKFQDSR SQKNRRPEGK GKGKGKGKGG GKGNAKGFGK GKGKGNPKGR GAR
001: MVEGKGFLVS SVTELHRKEK QKKKGKSGGF ESLNLGPNVF NAIKKKGYKV PTPIQRKTMP LILSGVDVVA MARTGSGKTA AFLIPMLEKL KQHVPQGGVR
101: ALILSPTRDL AEQTLKFTKE LGKFTDLRVS LLVGGDSMED QFEELTKGPD VIIATPGRLM HLLSEVDDMT LRTVEYVVFD EADSLFGMGF AEQLHQILTQ
201: LSENRQTLLF SATLPSALAE FAKAGLREPQ LVRLDVENKI SPDLKLSFLT VRPEEKYSAL LYLVREHISS DQQTLIFVST KHHVEFVNSL FKLENIEPSV
301: CYGDMDQDAR KIHVSRFRAR KTMLLIVTDI AARGIDIPLL DNVINWDFPP RPKIFVHRVG RAARAGRTGC AYSFVTPEDM PYMLDLHLFL SKPVRPAPTE
401: DEVLKNMEEV MTKTSQAIDS GVTVYGRFPQ KTIDLIFNRT REMIDSSAEL DSLERTSTKA FRLYSKTKPS PSKESIRRAK DLPREGLHPI FRSIIETGEL
501: EAMSFFQKIK NFRPKQTILE AEGEVAKSKH VKGPAGQWVD VMKKKRAIHE EIINTRHQQN QKTSNNHLEM EAEPTTSFVD GTVEGSKVSG KKRKAQETFK
601: DDEFFISSIP VNHHSEAGLS LRGNEGFGSN RLDAAVLDLV ADDGQGIKQQ QSNYHWDKKG KKYIKLNNGD RVTASGKIKT ESGAKATAKK TGIYKRWQER
701: SHKKVSRDSG DADETTRMSG RGGRDGKRRQ GSVPNAHVRS EIKDLDQVRK ERQQKANKVS YLQSKRGGRG GRGGARGGRG GGARGGRGGS RDFGGGGRDF
801: GSSSDRGGRS GGRDFGGRRG GASTSSRGGK RGGGRGGGGK RGRGR
101: ALILSPTRDL AEQTLKFTKE LGKFTDLRVS LLVGGDSMED QFEELTKGPD VIIATPGRLM HLLSEVDDMT LRTVEYVVFD EADSLFGMGF AEQLHQILTQ
201: LSENRQTLLF SATLPSALAE FAKAGLREPQ LVRLDVENKI SPDLKLSFLT VRPEEKYSAL LYLVREHISS DQQTLIFVST KHHVEFVNSL FKLENIEPSV
301: CYGDMDQDAR KIHVSRFRAR KTMLLIVTDI AARGIDIPLL DNVINWDFPP RPKIFVHRVG RAARAGRTGC AYSFVTPEDM PYMLDLHLFL SKPVRPAPTE
401: DEVLKNMEEV MTKTSQAIDS GVTVYGRFPQ KTIDLIFNRT REMIDSSAEL DSLERTSTKA FRLYSKTKPS PSKESIRRAK DLPREGLHPI FRSIIETGEL
501: EAMSFFQKIK NFRPKQTILE AEGEVAKSKH VKGPAGQWVD VMKKKRAIHE EIINTRHQQN QKTSNNHLEM EAEPTTSFVD GTVEGSKVSG KKRKAQETFK
601: DDEFFISSIP VNHHSEAGLS LRGNEGFGSN RLDAAVLDLV ADDGQGIKQQ QSNYHWDKKG KKYIKLNNGD RVTASGKIKT ESGAKATAKK TGIYKRWQER
701: SHKKVSRDSG DADETTRMSG RGGRDGKRRQ GSVPNAHVRS EIKDLDQVRK ERQQKANKVS YLQSKRGGRG GRGGARGGRG GGARGGRGGS RDFGGGGRDF
801: GSSSDRGGRS GGRDFGGRRG GASTSSRGGK RGGGRGGGGK RGRGR
Arabidopsis Description
RH29Putative DEAD-box ATP-dependent RNA helicase 29 [Source:UniProtKB/Swiss-Prot;Acc:O49289]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.