CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH46113	Soybean	nucleus	96.84	97.09
KRH37970	Soybean	cytosol	40.18	95.31
KRH37947	Soybean	plastid	69.57	89.64
VIT_18s0001g14540.t01	Wine grape	nucleus	75.63	78.42
Solyc04g081580.2.1	Tomato	nucleus	73.52	75.0
PGSC0003DMT400025551	Potato	nucleus	73.25	74.63
GSMUA_Achr8P12970_001	Banana	nucleus	69.04	68.41
CDY40519	Canola	nucleus	65.35	65.44
Zm00001d021127_P001	Maize	nucleus, plasma membrane	66.27	65.32
AT4G16630.1	Thale cress	nucleus	66.93	64.39
TraesCS5D01G385400.1	Wheat	nucleus	65.74	64.14
TraesCS5B01G378100.1	Wheat	nucleus	65.74	64.06
TraesCS5A01G375900.1	Wheat	nucleus	65.35	63.75
KXG35997	Sorghum	nucleus	66.53	63.6
Os12t0481100-01	Rice	nucleus	66.93	63.34
Zm00001d006113_P001	Maize	nucleus	65.35	62.86
CDY50846	Canola	nucleus	68.38	61.86
CDY53643	Canola	nucleus	68.38	61.49
HORVU5Hr1G093160.3	Barley	nucleus	65.61	59.93
Bra040743.1-P	Field mustard	nucleus	68.38	59.38
Bra038492.1-P	Field mustard	nucleus	62.98	52.64
CDY32273	Canola	nucleus	62.85	52.25
KRH65120	Soybean	cytosol	20.03	34.62
KRH48210	Soybean	nucleus	12.65	30.0
KRG97683	Soybean	nucleus	20.95	26.99
KRH43700	Soybean	cytosol	20.29	26.28
KRH13749	Soybean	cytosol, plastid	20.29	26.06
KRH12590	Soybean	nucleus	18.45	25.78
KRH56711	Soybean	nucleus	19.24	25.52
KRH37539	Soybean	nucleus	18.05	25.42
KRH62970	Soybean	nucleus	18.05	25.28
KRH54795	Soybean	nucleus	18.18	25.23
KRH03838	Soybean	nucleus	18.71	24.7
KRH31184	Soybean	nucleus	21.08	24.06
KRH54980	Soybean	nucleus	5.14	21.91
KRH09570	Soybean	nucleus	22.4	21.88
KRH64859	Soybean	nucleus	22.27	21.75
KRH47920	Soybean	nucleus	19.76	21.34
KRH41139	Soybean	nucleus	19.37	20.79
KRH48208	Soybean	nucleus	21.48	20.12
KRH65117	Soybean	plastid	20.55	18.93
KRH73730	Soybean	nucleus	18.58	18.9
KRH06491	Soybean	nucleus	20.03	18.86
KRH59841	Soybean	nucleus	13.04	18.71
KRH14417	Soybean	cytosol, nucleus	11.99	17.23

Protein Annotations

EntrezGene:100776684	Gene3D:3.40.50.300	MapMan:35.1	EMBL:ACUP02010924	ncoils:Coil	InterPro:DEAD/DEAH_box_helicase_dom
EnsemblPlantsGene:GLYMA_18G101600	GO:GO:0000166	GO:GO:0003674	GO:GO:0003676	GO:GO:0003824	GO:GO:0004004
GO:GO:0004386	GO:GO:0005488	GO:GO:0005524	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0005730	GO:GO:0005737	GO:GO:0006139	GO:GO:0008150	GO:GO:0008152
GO:GO:0009987	GO:GO:0010501	GO:GO:0016787	InterPro:Helicase_ATP-bd	InterPro:Helicase_C	InterPro:IPR001650
InterPro:IPR014001	InterPro:IPR014014	UniProt:K7MR15	EnsemblPlants:KRG98832	ProteinID:KRG98832	ProteinID:KRG98832.1
InterPro:P-loop_NTPase	PFAM:PF00270	PFAM:PF00271	ScanProsite:PS00039	PFscan:PS51192	PFscan:PS51194
PFscan:PS51195	PANTHER:PTHR24031	PANTHER:PTHR24031:SF541	InterPro:RNA-helicase_DEAD-box_CS	InterPro:RNA_helicase_DEAD_Q_motif	SMART:SM00487
SMART:SM00490	SUPFAM:SSF52540	UniParc:UPI000294BEF4	SEG:seg	:	:

Description

hypothetical protein

Coordinates

chr18:+:10786333..10795596

Molecular Weight (calculated)

85241.6 Da

IEP (calculated)

8.808

GRAVY (calculated)

-0.714

Length

759 amino acids

Sequence
(BLAST)

001: MSPSFVFDPP SDEEIEHSEH EEEEESEEEP ESGSGTGSES ESEGEGEEEE GHEEARVPKK KKKKTQSPWD FAKYTESVAE EHARRSTTSV DEKISKALKQ
101: RSTPLVAELD HSSESEPDEQ VEDYRPEEED EEEGNDGDSK SFFAPSDGTS FHADSFLQLN LSRPLLRACE ALGYSKPTPI QAACIPLALS GRDICGSAIT
201: GSGKTAAFAL PTLERLLFRP KRMRAIRVLI LTPTRELAVQ VHSMIEKLAQ FTDIRCCLVV GGLSTKVQEA ALRTMPDIVV ATPGRMIDHL RNAMSVDLDD
301: LAVLILDEAD RLLELGFSAE IQELVRLCPK KRQTMLFSAT MTEEVDELIK LSLSKPLRLS ADPSTKRPAT LTEEVVRIRR MREVNQEAVL LAMCSKTFTS
401: KVIIFSGTKQ AAHRLKIIFG LAGSKAAELH GNLTQAQRLE ALEQFRKQQV DFLVATDVAA RGLDIIGVQT VINFACPRDL TSYVHRVGRT ARAGREGYAV
501: TFVTDNDRSL LKAIAKRAGS KLKSRIVAEQ SIHKWSHIIE QMEDQISEVL QEEREERVLR KAEMEATKAE NMIAHREEIF SRPKRTWFVT EKEKKLASKA
601: SKASMDNSKS SGKDVISAEQ AENLRMKEKR KREREKHLPR KQRRKLEAAR EMLEDEEEDG KQVEAKGGNK KDKGGMSLVD LAYRRAKAVK AVKKALDSGK
701: IVEKNKKKSN NNSRKTPSRT EEMRELFQTD MKDKKPKRGV GGGKKSKSSF KSKSRYKRK

Best Arabidopsis Sequence Match ( AT4G16630.1 )
(BLAST)

001: MPSSFFFEDA SDDELELIRN QEDSSEEDVK EGEAEEHEAG EDEDGEEEYE EEDDDEEEED EKRKRDADAQ SPWDFASYSS SVGEEHARRH TTSIDEKISK
101: AIQHRPVPIS INEEEEEEEE EEDASDAETD KQEEYLSEDD EAAEYKPEDA TPKPFFSTVD GVSFHADTFM ELNLSRPLLR ACETLGYKKP TPIQAACIPL
201: ALTGRDLCAS AITGSGKTAA FALPTLERLL FRPKRVFATR VLILTPTREL AVQIHSMIQN LAQFTDIKCG LIVGGLSVRE QEVVLRSMPD IVVATPGRMI
301: DHLRNSMSVD LDDLAVLILD EADRLLQTGF ATEITELVRL CPKRRQTMLF SATMTEEVKE LVKLSLNKPL RLSADPSARR PPGLTEEVVR IRRTREANQE
401: AVLLSLCTRT FKSKVIIFSG TKQAAHRLKI LFGLAGLKAA ELHGNLTQAQ RLDSLELFRK QEVDFLIATD VAARGLDIIG VQTVINYACP REIDSYVHRV
501: GRTARAGREG YAVTFVTDSD RSLLKVIAKK VGSKLKSRVI PEQSIVKWSQ IIDEMEDQYS AVISAERDER ALRKAEMEFA KAENMLEHRD EIYARPKRTW
601: FMTEKEKKLV AQAEKDSAGN PAGGELVSAD RAEDLKMKEK RKREREKNLP RKKRRKLEAA REMLEDNEGE EEEEDEEGDE KRGRSRGKDK KKQETDKKGL
701: TLKDLGYMRA KAVKAKQRAI DSGKMERPKP DKKQSRSKPR NQPRGEEMKD LFKSDMGEKK QGRGGAAAAA KPRTKSKNSF KSKARYKRR

Arabidopsis Description

RH28DEAD-box ATP-dependent RNA helicase 28 [Source:UniProtKB/Swiss-Prot;Acc:Q9ZRZ8]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.