Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS5B01G378100.1 | Wheat | nucleus | 99.36 | 99.23 |
| TraesCS5A01G375900.1 | Wheat | nucleus | 97.81 | 97.81 |
| HORVU5Hr1G093160.3 | Barley | nucleus | 95.89 | 89.77 |
| Os12t0481100-01 | Rice | nucleus | 83.55 | 81.05 |
| Zm00001d021127_P001 | Maize | nucleus, plasma membrane | 78.15 | 78.96 |
| KXG35997 | Sorghum | nucleus | 80.46 | 78.84 |
| Zm00001d006113_P001 | Maize | nucleus | 78.15 | 77.06 |
| GSMUA_Achr8P12970_001 | Banana | nucleus | 69.79 | 70.89 |
| KRH37970 | Soybean | cytosol | 28.02 | 68.12 |
| KRH37947 | Soybean | plastid | 51.54 | 68.08 |
| VIT_18s0001g14540.t01 | Wine grape | nucleus | 63.88 | 67.9 |
| Solyc04g081580.2.1 | Tomato | nucleus | 63.62 | 66.53 |
| KRH46113 | Soybean | nucleus | 64.65 | 66.45 |
| PGSC0003DMT400025551 | Potato | nucleus | 63.5 | 66.31 |
| KRG98832 | Soybean | nucleus | 64.14 | 65.74 |
| AT4G16630.1 | Thale cress | nucleus | 60.67 | 59.82 |
| CDY40519 | Canola | nucleus | 57.58 | 59.1 |
| CDY50846 | Canola | nucleus | 60.03 | 55.66 |
| CDY53643 | Canola | nucleus | 60.15 | 55.45 |
| Bra040743.1-P | Field mustard | nucleus | 60.15 | 53.55 |
| Bra038492.1-P | Field mustard | nucleus | 55.4 | 47.47 |
| CDY32273 | Canola | nucleus | 55.53 | 47.32 |
| TraesCS2D01G131200.1 | Wheat | nucleus | 18.89 | 32.1 |
| TraesCS6D01G103400.1 | Wheat | nucleus | 18.25 | 31.98 |
| TraesCS2D01G160100.1 | Wheat | cytosol | 19.02 | 29.02 |
| TraesCS3D01G230300.1 | Wheat | nucleus | 17.61 | 25.46 |
| TraesCS5D01G050600.1 | Wheat | nucleus | 17.87 | 24.87 |
| TraesCS5D01G127000.1 | Wheat | nucleus | 18.38 | 24.66 |
| TraesCS6D01G292400.1 | Wheat | nucleus | 17.48 | 24.59 |
| TraesCS1D01G031400.1 | Wheat | nucleus | 18.51 | 23.53 |
| TraesCS3D01G100800.1 | Wheat | plastid | 19.28 | 23.33 |
| TraesCS3D01G230400.2 | Wheat | mitochondrion | 16.58 | 21.94 |
| TraesCS2D01G363700.1 | Wheat | nucleus | 21.59 | 20.1 |
| TraesCS4D01G337100.1 | Wheat | nucleus | 21.08 | 19.27 |
| TraesCS2D01G228000.1 | Wheat | nucleus | 18.25 | 18.59 |
| TraesCS7D01G309800.1 | Wheat | nucleus | 7.07 | 17.63 |
| TraesCS6D01G392700.1 | Wheat | cytosol | 18.38 | 16.98 |
| TraesCS7D01G328100.1 | Wheat | mitochondrion | 19.41 | 15.75 |
Protein Annotations
| Gene3D:3.40.50.300 | MapMan:35.1 | ncoils:Coil | InterPro:DEAD/DEAH_box_helicase_dom | GO:GO:0000166 | GO:GO:0003674 |
| GO:GO:0003676 | GO:GO:0005488 | GO:GO:0005524 | InterPro:Helicase_ATP-bd | InterPro:Helicase_C | InterPro:IPR001650 |
| InterPro:IPR014001 | InterPro:IPR014014 | InterPro:P-loop_NTPase | PFAM:PF00270 | PFAM:PF00271 | ScanProsite:PS00039 |
| PFscan:PS51192 | PFscan:PS51194 | PFscan:PS51195 | PANTHER:PTHR24031 | PANTHER:PTHR24031:SF541 | InterPro:RNA-helicase_DEAD-box_CS |
| InterPro:RNA_helicase_DEAD_Q_motif | SMART:SM00487 | SMART:SM00490 | SUPFAM:SSF52540 | EnsemblPlantsGene:TraesCS5D01G385400 | EnsemblPlants:TraesCS5D01G385400.1 |
| TIGR:cd00079 | TIGR:cd00268 | SEG:seg | : | : | : |
Description
No Description!
Coordinates
chr5D:-:454729961..454732297
Molecular Weight (calculated)
86816.6 Da
IEP (calculated)
5.361
GRAVY (calculated)
-0.705
Length
778 amino acids
Sequence
(BLAST)
(BLAST)
001: MDPDFRFDPD GSDDEAPAGA AARRKPAQSP WEFSTYAESV AAEHAARRTT SIDEKISQAL RGRRNPSMPD GSEDEEEDDA DDDSDEEAAV KGESGDDEDE
101: IEESDDDEEI ESSGGEEDGE VEAGGQEEEE EDEEVGEEEE AVQEEDDAPE QPDPSQFFAS SEGASFSARS FLELNLSRPL IRACEALGYQ KPTPIQAACI
201: PLALTGRDIC GSAITGSGKT AAFSLPVLER LLFRPKRVPA IRVLILTPTR ELAAQVHSMI EKLAQFTDIR CCLIVGGLPT KAQEVALRSN PDIVVATPGR
301: IVDHLRNSLS VGLEDLAVLI LDEADRLLEL GFSVEIGELI RMCPKRRQTM LFSATMTEQI DELVKLSLNK PVRLEADPSL KRPATLTEEV VRIRRSREAT
401: QEAVLLALCL KTFKERVIIF SGTKHSAHRL KILFGLSGIK AAELHGNLTQ AQRLEALEQF KKQEADILIA TDIAARGIDI VGVRTVINFA CPRDVKTYLH
501: RVGRTARAGR EGYAVTFVTD DDRSLLKAIA KKAGSQLKSR IVAEKPVSDC AKLIEQLEHQ ISNIILEERE EMALRKAEME ATKAENMIAH RDEIYSRPKR
601: TWFATEKEKK LLAKAAKESL DQVKGGSVVV SAQQAEDLRL KEKRRREREK NLPRKKRRKL EAQREMLEEE KEDEEEAQES KGGKKAKSSQ SVVDVAYRRA
701: KSMKATGKTG IRSSKGKNEK GSKQPSEKGQ TRQEEMHELF QNDMSEWKQG RSLKKKDTSF AKKSKNSFKS KSRYKRRK
101: IEESDDDEEI ESSGGEEDGE VEAGGQEEEE EDEEVGEEEE AVQEEDDAPE QPDPSQFFAS SEGASFSARS FLELNLSRPL IRACEALGYQ KPTPIQAACI
201: PLALTGRDIC GSAITGSGKT AAFSLPVLER LLFRPKRVPA IRVLILTPTR ELAAQVHSMI EKLAQFTDIR CCLIVGGLPT KAQEVALRSN PDIVVATPGR
301: IVDHLRNSLS VGLEDLAVLI LDEADRLLEL GFSVEIGELI RMCPKRRQTM LFSATMTEQI DELVKLSLNK PVRLEADPSL KRPATLTEEV VRIRRSREAT
401: QEAVLLALCL KTFKERVIIF SGTKHSAHRL KILFGLSGIK AAELHGNLTQ AQRLEALEQF KKQEADILIA TDIAARGIDI VGVRTVINFA CPRDVKTYLH
501: RVGRTARAGR EGYAVTFVTD DDRSLLKAIA KKAGSQLKSR IVAEKPVSDC AKLIEQLEHQ ISNIILEERE EMALRKAEME ATKAENMIAH RDEIYSRPKR
601: TWFATEKEKK LLAKAAKESL DQVKGGSVVV SAQQAEDLRL KEKRRREREK NLPRKKRRKL EAQREMLEEE KEDEEEAQES KGGKKAKSSQ SVVDVAYRRA
701: KSMKATGKTG IRSSKGKNEK GSKQPSEKGQ TRQEEMHELF QNDMSEWKQG RSLKKKDTSF AKKSKNSFKS KSRYKRRK
001: MPSSFFFEDA SDDELELIRN QEDSSEEDVK EGEAEEHEAG EDEDGEEEYE EEDDDEEEED EKRKRDADAQ SPWDFASYSS SVGEEHARRH TTSIDEKISK
101: AIQHRPVPIS INEEEEEEEE EEDASDAETD KQEEYLSEDD EAAEYKPEDA TPKPFFSTVD GVSFHADTFM ELNLSRPLLR ACETLGYKKP TPIQAACIPL
201: ALTGRDLCAS AITGSGKTAA FALPTLERLL FRPKRVFATR VLILTPTREL AVQIHSMIQN LAQFTDIKCG LIVGGLSVRE QEVVLRSMPD IVVATPGRMI
301: DHLRNSMSVD LDDLAVLILD EADRLLQTGF ATEITELVRL CPKRRQTMLF SATMTEEVKE LVKLSLNKPL RLSADPSARR PPGLTEEVVR IRRTREANQE
401: AVLLSLCTRT FKSKVIIFSG TKQAAHRLKI LFGLAGLKAA ELHGNLTQAQ RLDSLELFRK QEVDFLIATD VAARGLDIIG VQTVINYACP REIDSYVHRV
501: GRTARAGREG YAVTFVTDSD RSLLKVIAKK VGSKLKSRVI PEQSIVKWSQ IIDEMEDQYS AVISAERDER ALRKAEMEFA KAENMLEHRD EIYARPKRTW
601: FMTEKEKKLV AQAEKDSAGN PAGGELVSAD RAEDLKMKEK RKREREKNLP RKKRRKLEAA REMLEDNEGE EEEEDEEGDE KRGRSRGKDK KKQETDKKGL
701: TLKDLGYMRA KAVKAKQRAI DSGKMERPKP DKKQSRSKPR NQPRGEEMKD LFKSDMGEKK QGRGGAAAAA KPRTKSKNSF KSKARYKRR
101: AIQHRPVPIS INEEEEEEEE EEDASDAETD KQEEYLSEDD EAAEYKPEDA TPKPFFSTVD GVSFHADTFM ELNLSRPLLR ACETLGYKKP TPIQAACIPL
201: ALTGRDLCAS AITGSGKTAA FALPTLERLL FRPKRVFATR VLILTPTREL AVQIHSMIQN LAQFTDIKCG LIVGGLSVRE QEVVLRSMPD IVVATPGRMI
301: DHLRNSMSVD LDDLAVLILD EADRLLQTGF ATEITELVRL CPKRRQTMLF SATMTEEVKE LVKLSLNKPL RLSADPSARR PPGLTEEVVR IRRTREANQE
401: AVLLSLCTRT FKSKVIIFSG TKQAAHRLKI LFGLAGLKAA ELHGNLTQAQ RLDSLELFRK QEVDFLIATD VAARGLDIIG VQTVINYACP REIDSYVHRV
501: GRTARAGREG YAVTFVTDSD RSLLKVIAKK VGSKLKSRVI PEQSIVKWSQ IIDEMEDQYS AVISAERDER ALRKAEMEFA KAENMLEHRD EIYARPKRTW
601: FMTEKEKKLV AQAEKDSAGN PAGGELVSAD RAEDLKMKEK RKREREKNLP RKKRRKLEAA REMLEDNEGE EEEEDEEGDE KRGRSRGKDK KKQETDKKGL
701: TLKDLGYMRA KAVKAKQRAI DSGKMERPKP DKKQSRSKPR NQPRGEEMKD LFKSDMGEKK QGRGGAAAAA KPRTKSKNSF KSKARYKRR
Arabidopsis Description
RH28DEAD-box ATP-dependent RNA helicase 28 [Source:UniProtKB/Swiss-Prot;Acc:Q9ZRZ8]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.