Factsheet for Zm00001d000431_P001

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

nucleus 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	mitochondrion, nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

plastid: 22065420
plastid: 23198870

msms PMID: 23198870 doi

M Huang, G Friso, K Nishimura, X Qu, PD Olinares, W Majeran, Q Sun, KJ van Wijk

Department of Plant Biology, Cornell University, Ithaca, New York 14853, United States.

msms PMID: 22065420 doi

W Majeran, G Friso, Y Asakura, X Qu, M Huang, L Ponnala, KP Watkins, A Barkan, KJ van Wijk

Department of Plant Biology, Cornell University, Ithaca, New York 14853, USA.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KXG37786	Sorghum	nucleus	77.98	83.66
Zm00001d023501_P001	Maize	nucleus	69.14	55.72
Os06t0535100-00	Rice	nucleus	63.99	53.44
GSMUA_Achr10P...	Banana	cytosol	53.7	50.48
Zm00001d013056_P001	Maize	nucleus	65.64	48.63
KRH62970	Soybean	nucleus	51.85	46.49
Solyc03g114370.2.1	Tomato	nucleus	53.91	46.29
PGSC0003DMT400063252	Potato	nucleus	53.5	45.94
VIT_17s0000g04310.t01	Wine grape	cytosol	51.65	45.64
KRH54795	Soybean	nucleus	51.23	45.52
KRH03838	Soybean	nucleus	53.09	44.87
KRH56711	Soybean	nucleus	52.67	44.76
GSMUA_Achr7P07500_001	Banana	cytosol, nucleus, peroxisome	50.0	43.55
Bra022336.1-P	Field mustard	nucleus	50.41	43.13
CDX99342	Canola	nucleus	50.21	42.96
CDX92251	Canola	nucleus	50.21	42.88
CDY18530	Canola	nucleus	50.0	42.78
Bra037574.1-P	Field mustard	nucleus	49.79	42.76
CDX95512	Canola	nucleus	50.0	42.63
CDX82336	Canola	nucleus	50.0	42.41
AT3G18600.1	Thale cress	nucleus	49.18	42.08
CDX75974	Canola	nucleus	50.21	41.92
CDY36514	Canola	nucleus	49.18	40.99
Bra024428.1-P	Field mustard	nucleus	49.59	40.78
CDY08740	Canola	nucleus	49.59	40.57
Bra001713.1-P	Field mustard	nucleus	49.79	39.93
AT5G65900.1	Thale cress	nucleus	49.59	38.07
Zm00001d027279_P001	Maize	nucleus	19.14	32.63
Zm00001d024719_P001	Maize	nucleus	20.99	30.18
Zm00001d014787_P001	Maize	nucleus	27.37	28.6
Zm00001d041799_P001	Maize	cytosol	14.4	26.52
Zm00001d010225_P001	Maize	plasma membrane	25.93	24.51
Zm00001d044203_P001	Maize	plasma membrane	27.98	24.29
Zm00001d022246_P001	Maize	cytosol	25.93	24.23
Zm00001d048477_P001	Maize	plastid	9.26	24.06
Zm00001d044208_P001	Maize	plastid	29.01	24.06
Zm00001d002007_P002	Maize	cytosol, mitochondrion, plastid	15.43	20.72
Zm00001d039746_P001	Maize	nucleus	29.84	20.0
Zm00001d006497_P002	Maize	nucleus	29.01	18.85
Zm00001d018516_P002	Maize	mitochondrion	28.81	17.11
Zm00001d046097_P001	Maize	mitochondrion	31.28	16.24
Zm00001d021127_P001	Maize	nucleus, plasma membrane	24.28	15.32
Zm00001d006113_P001	Maize	nucleus	24.69	15.21
Zm00001d050315_P001	Maize	nucleus	25.31	14.64
Zm00001d003031_P002	Maize	nucleus	24.07	13.83
Zm00001d032317_P001	Maize	nucleus	10.91	10.84

Protein Annotations

Gene3D:3.40.50.300	MapMan:35.1	UniProt:A0A1X7YIN9	InterPro:DEAD/DEAH_box_helicase_dom	GO:GO:0000166	GO:GO:0003674
GO:GO:0003676	GO:GO:0003824	GO:GO:0004386	GO:GO:0005488	GO:GO:0005524	GO:GO:0016787
InterPro:Helicase_ATP-bd	InterPro:Helicase_C	InterPro:IPR001650	InterPro:IPR014001	InterPro:IPR014014	InterPro:P-loop_NTPase
PFAM:PF00270	PFAM:PF00271	ScanProsite:PS00039	PFscan:PS51192	PFscan:PS51194	PFscan:PS51195
PANTHER:PTHR24031	PANTHER:PTHR24031:SF305	InterPro:RNA-helicase_DEAD-box_CS	InterPro:RNA_helicase_DEAD_Q_motif	SMART:SM00487	SMART:SM00490
SUPFAM:SSF52540	UniParc:UPI0008452A95	EnsemblPlantsGene:Zm00001d000431	EnsemblPlants:Zm00001d000431_P001	EnsemblPlants:Zm00001d000431_T001	SEG:seg

Description

DEAD-box ATP-dependent RNA helicase 51

Coordinates

chrB73V4_ctg2:+:11524..19975

Molecular Weight (calculated)

54932.7 Da

IEP (calculated)

9.937

GRAVY (calculated)

-0.550

Length

486 amino acids

Sequence
(BLAST)

001: MDERRMTRPH PPDAPARPDA ALPRRPDVQS CPGAACDELQ REKRKEGKGK GKRKRKRKDD GEMEGTGKDK TMGKKEKNGE EKLKKGKGGG ILTNKLFSEL
101: CISELTAKAI REMNYTHLTK IQARSIPHLM EGSDVMGSAK TGSGKTLAFL VPAIELLHRS HFLPRNGTGV VVVCPTRELA IQTHNVAKEL MKYHSQTLGY
201: VIGGTSMRSE ANQLAEGINI LVATPGRLLD HLRNTSSFKY KELKCLIIDE ADRILEQNFE EDMKQIFKRL PQDRQSVLFS ATQTKKVQDF ANFTFGKNEE
301: RQRKLVYVGV DDSELKLWQP TVEGLQQGYC VIPSEKRFLV LYTFLRLKAR EAQTAKAALR GEVGEEQKKV KIMVFFSSCS SVKFHAELLN FLGIECYEIH
401: GQLKQQKRTS TFFRFLKEKS GILLCTNVAA RGLDIPEVDY IVQYDPPDDP KDYIHRVGRT ARGDKGRGSA LLFLLPEELK LLIHLQ

Best Arabidopsis Sequence Match ( AT5G65900.1 )
(BLAST)

001: MANLDMEQHS SENEEIKKKK HKKRARDEAK KLKQPAMEEE PDHEDGDAKE NNALIDEEPK KKKKKKNKKR GDTDDGEDEA VAEEEPKKKK KKNKKLQQRG
101: DTNDEEDEVI AEEEEPKKKK KKQRKDTEAK SEEEEVEDKE EEKKLEETSI MTNKTFESLS LSDNTYKSIK EMGFARMTQI QAKAIPPLMM GEDVLGAART
201: GSGKTLAFLI PAVELLYRVK FTPRNGTGVL VICPTRELAI QSYGVAKELL KYHSQTVGKV IGGEKRKTEA EILAKGVNLL VATPGRLLDH LENTNGFIFK
301: NLKFLVMDEA DRILEQNFEE DLKKILNLLP KTRQTSLFSA TQSAKVEDLA RVSLTSPVYI DVDEGRKEVT NEGLEQGYCV VPSAMRLLFL LTFLKRFQGK
401: KKIMVFFSTC KSTKFHAELF RYIKFDCLEI RGGIDQNKRT PTFLQFIKAE TGILLCTNVA ARGLDFPHVD WIVQYDPPDN PTDYIHRVGR TARGEGAKGK
501: ALLVLTPQEL KFIQYLKAAK IPVEEHEFEE KKLLDVKPFV ENLISENYAL KESAKEAYKT YISGYDSHSM KDVFNVHQLN LTEVATSFGF SDPPKVALKI
601: DRGGYRSKRE PVNKFKRGRG GGRPGGKSKF ERY

Arabidopsis Description

RH27DEAD-box ATP-dependent RNA helicase 27 [Source:UniProtKB/Swiss-Prot;Acc:Q9SB89]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.