Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- cytosol 1
- mitochondrion 1
- nucleus 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Zm00001d024719_P001 | Maize | nucleus | 92.28 | 77.81 |
| Zm00001d041799_P001 | Maize | cytosol | 59.65 | 64.39 |
| Zm00001d002007_P002 | Maize | cytosol, mitochondrion, plastid | 67.02 | 52.76 |
| EES00264 | Sorghum | nucleus, plastid | 94.39 | 41.77 |
| Zm00001d039746_P001 | Maize | nucleus | 95.79 | 37.66 |
| Os01t0164500-01 | Rice | plastid | 80.35 | 35.39 |
| TraesCS3B01G116900.1 | Wheat | plastid | 78.6 | 34.84 |
| TraesCS3D01G100800.1 | Wheat | plastid | 77.54 | 34.37 |
| TraesCS3A01G100100.1 | Wheat | plastid | 77.54 | 34.32 |
| HORVU3Hr1G018130.7 | Barley | plastid | 76.84 | 32.35 |
| AT1G71280.1 | Thale cress | nucleus | 50.53 | 30.97 |
| VIT_13s0067g01900.t01 | Wine grape | nucleus | 63.16 | 30.25 |
| KRG97683 | Soybean | nucleus | 62.46 | 30.22 |
| Solyc02g078880.2.1 | Tomato | nucleus | 61.75 | 29.63 |
| Bra009114.1-P | Field mustard | nucleus | 61.05 | 29.24 |
| AT5G05450.1 | Thale cress | nucleus | 60.7 | 29.17 |
| Bra028757.1-P | Field mustard | nucleus | 60.35 | 28.96 |
| GSMUA_Achr8P01870_001 | Banana | cytosol | 65.61 | 28.73 |
| AT1G71370.1 | Thale cress | nucleus | 56.14 | 28.67 |
| PGSC0003DMT400057606 | Potato | nucleus | 61.4 | 28.09 |
| KRH31184 | Soybean | nucleus | 61.4 | 26.32 |
| Zm00001d000431_P001 | Maize | plastid | 32.63 | 19.14 |
| Zm00001d014787_P001 | Maize | nucleus | 30.88 | 18.92 |
| Zm00001d044203_P001 | Maize | plasma membrane | 29.12 | 14.82 |
| Zm00001d044208_P001 | Maize | plastid | 29.47 | 14.33 |
| Zm00001d022246_P001 | Maize | cytosol | 25.96 | 14.23 |
| Zm00001d023501_P001 | Maize | nucleus | 29.82 | 14.1 |
| Zm00001d013056_P001 | Maize | nucleus | 31.23 | 13.57 |
| Zm00001d006497_P002 | Maize | nucleus | 30.88 | 11.76 |
| Zm00001d010225_P001 | Maize | plasma membrane | 20.0 | 11.09 |
| Zm00001d018516_P002 | Maize | mitochondrion | 31.23 | 10.88 |
| Zm00001d021127_P001 | Maize | nucleus, plasma membrane | 28.42 | 10.52 |
| Zm00001d006113_P001 | Maize | nucleus | 28.77 | 10.39 |
| Zm00001d003031_P002 | Maize | nucleus | 27.37 | 9.22 |
| Zm00001d046097_P001 | Maize | mitochondrion | 30.18 | 9.19 |
| Zm00001d050315_P001 | Maize | nucleus | 24.91 | 8.45 |
| Zm00001d032317_P001 | Maize | nucleus | 9.82 | 5.73 |
| Zm00001d048477_P001 | Maize | plastid | 0.7 | 1.07 |
Protein Annotations
| Gene3D:3.40.50.300 | MapMan:35.1 | UniProt:A0A1D6JK14 | InterPro:DEAD/DEAH_box_helicase_dom | GO:GO:0000166 | GO:GO:0003674 |
| GO:GO:0003676 | GO:GO:0003824 | GO:GO:0004386 | GO:GO:0005488 | GO:GO:0005524 | GO:GO:0016787 |
| InterPro:Helicase_ATP-bd | InterPro:IPR014001 | InterPro:IPR014014 | ProteinID:ONL92595.1 | InterPro:P-loop_NTPase | PFAM:PF00270 |
| ScanProsite:PS00039 | PFscan:PS51192 | PFscan:PS51195 | PANTHER:PTHR24031 | PANTHER:PTHR24031:SF2 | InterPro:RNA-helicase_DEAD-box_CS |
| InterPro:RNA_helicase_DEAD_Q_motif | SMART:SM00487 | SUPFAM:SSF52540 | UniParc:UPI0008430B31 | EnsemblPlantsGene:Zm00001d027279 | EnsemblPlants:Zm00001d027279_P001 |
| EnsemblPlants:Zm00001d027279_T001 | : | : | : | : | : |
Description
DEAD-box ATP-dependent RNA helicase 18
Coordinates
chr1:+:1547137..1548341
Molecular Weight (calculated)
30971.9 Da
IEP (calculated)
9.131
GRAVY (calculated)
0.073
Length
285 amino acids
Sequence
(BLAST)
(BLAST)
001: MAASTVAATA RKGALTDQRF SELSPALSLE VVEALDRGGF QWCTPVQAAA IPHLLSHKDV AVDAATGSRK TLAFIVPVVE ILRRRSSPPK SHEVLAMIIS
101: PTRELSLQIF NVAQPFFATL NGVSSMFLVG GLDIKAELKK VEEEGANILV GTPGKLFDIM HTDALEYKNL EILILDEADR LLDMGFQKHI NFVLSMLPKL
201: RRTGLFSATQ TKAVADLSKA GLRNLIRVEV KTEAKSTSKD AGQQELGPSI TPLGLRLEYM VCEASKKSSQ LADFLVQNSG KKIMV
101: PTRELSLQIF NVAQPFFATL NGVSSMFLVG GLDIKAELKK VEEEGANILV GTPGKLFDIM HTDALEYKNL EILILDEADR LLDMGFQKHI NFVLSMLPKL
201: RRTGLFSATQ TKAVADLSKA GLRNLIRVEV KTEAKSTSKD AGQQELGPSI TPLGLRLEYM VCEASKKSSQ LADFLVQNSG KKIMV
001: MDSSPPNTII EEAPPRFSEL KPPLSEDIIE ALDRSGFEVC TPVQAETIPF LCSHKDVVVD AATGSGKTLA FLLPFIEIIR RSNSYPPKPH QVMGVIISPT
101: RELSAQIHKV ARAVRLDFAK CREVEADMNT LEEEGANLLI GTPGRLSDMM KRMEFLDFRN LEILILDEAD RLLDMGFQKQ VNYIISRLPK QRRTGLFSAT
201: QTQAVADLAK AGLRNPYLKC EADQKSSQLV HLLIENKNKK LVVFFMTCAC VDYWGLVISK IPSLKSISFF PTHGKMDQKG RDTALASFTE ASSGVLLCTD
301: VAARGLDIPG IVYIRSLAIK DREVLEKGLK AFVSFVRAYK EHQCSYIFSW KGLEIGKLAM GYGILSFPYI SEVKQDRIGI VGFTPVQGIT FEDIKFKNKS
401: REKQRQQNLL ARKDKLQQEK RGKRKKSSKE AVDDSNKASR KRKLTGRQRQ TIQTAQDEEE MNLRL
101: RELSAQIHKV ARAVRLDFAK CREVEADMNT LEEEGANLLI GTPGRLSDMM KRMEFLDFRN LEILILDEAD RLLDMGFQKQ VNYIISRLPK QRRTGLFSAT
201: QTQAVADLAK AGLRNPYLKC EADQKSSQLV HLLIENKNKK LVVFFMTCAC VDYWGLVISK IPSLKSISFF PTHGKMDQKG RDTALASFTE ASSGVLLCTD
301: VAARGLDIPG IVYIRSLAIK DREVLEKGLK AFVSFVRAYK EHQCSYIFSW KGLEIGKLAM GYGILSFPYI SEVKQDRIGI VGFTPVQGIT FEDIKFKNKS
401: REKQRQQNLL ARKDKLQQEK RGKRKKSSKE AVDDSNKASR KRKLTGRQRQ TIQTAQDEEE MNLRL
Arabidopsis Description
RH55DEAD-box ATP-dependent RNA helicase 55 [Source:UniProtKB/Swiss-Prot;Acc:Q9FVV4]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.