Factsheet for TraesCS2B01G150800.1

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 1
mitochondrion 5
nucleus 1
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS2A01G128700.1	Wheat	nucleus	87.79	98.91
TraesCS2D01G131200.1	Wheat	nucleus	87.79	98.91
TraesCS6B01G142500.1	Wheat	mitochondrion, nucleus	81.98	88.12
HORVU2Hr1G022490.2	Barley	nucleus	75.97	79.51
OQU93356	Sorghum	cytosol	68.8	78.19
Os03t0669000-01	Rice	cytosol, nucleus, plastid	71.12	77.75
Zm00001d048477_P001	Maize	plastid	27.91	77.01
Zm00001d014787_P001	Maize	nucleus	68.6	76.13
Os07t0660000-00	Rice	cytosol	61.63	71.46
VIT_01s0010g01890.t01	Wine grape	nucleus	51.55	64.72
KRH65120	Soybean	cytosol	54.65	64.24
Solyc10g007550.2.1	Tomato	cytosol, nucleus	54.65	64.24
CDY42845	Canola	cytosol	54.07	62.14
CDY47007	Canola	cytosol	53.88	61.92
KRH48210	Soybean	nucleus	38.37	61.88
Bra029342.1-P	Field mustard	cytosol	53.88	61.5
AT5G60990.1	Thale cress	nucleus	53.88	60.96
VIT_11s0065g01090.t01	Wine grape	cytosol	56.2	53.8
GSMUA_Achr8P34380_001	Banana	cytosol	59.5	42.23
TraesCS2B01G179900.1	Wheat	cytosol	33.14	33.46
TraesCS5B01G120400.1	Wheat	nucleus	27.52	24.48
TraesCS6B01G342900.1	Wheat	nucleus	25.39	23.99
TraesCS3B01G252700.2	Wheat	nucleus	21.51	23.27
TraesCS1B01G037600.1	Wheat	nucleus	25.78	21.59
TraesCS3B01G116900.1	Wheat	plastid	26.74	21.46
TraesCS3B01G252600.1	Wheat	plastid	23.64	20.85
TraesCS5B01G378100.1	Wheat	nucleus	28.49	18.87
TraesCS7B01G213800.1	Wheat	nucleus	10.47	17.48
TraesCS2B01G247500.1	Wheat	nucleus	24.42	16.51
TraesCS2B01G384300.1	Wheat	nucleus	25.78	15.93
TraesCS4B01G341100.1	Wheat	plastid	25.97	15.69
TraesCS6B01G455000.1	Wheat	cytosol	23.64	14.47
TraesCS7B01G232200.1	Wheat	mitochondrion	23.06	12.28

Protein Annotations

Gene3D:3.40.50.300	MapMan:35.1	InterPro:DEAD/DEAH_box_helicase_dom	GO:GO:0000166	GO:GO:0003674	GO:GO:0003676
GO:GO:0005488	GO:GO:0005524	InterPro:Helicase_ATP-bd	InterPro:Helicase_C	InterPro:IPR001650	InterPro:IPR014001
InterPro:IPR014014	InterPro:P-loop_NTPase	PFAM:PF00270	PFAM:PF00271	ScanProsite:PS00039	PFscan:PS51192
PFscan:PS51194	PFscan:PS51195	PANTHER:PTHR24031	PANTHER:PTHR24031:SF78	InterPro:RNA-helicase_DEAD-box_CS	InterPro:RNA_helicase_DEAD_Q_motif
SMART:SM00487	SMART:SM00490	SUPFAM:SSF52540	EnsemblPlantsGene:TraesCS2B01G150800	EnsemblPlants:TraesCS2B01G150800.1	TIGR:cd00079
TIGR:cd00268	SEG:seg	:	:	:	:

Description

No Description!

Coordinates

chr2B:-:117884728..117890136

Molecular Weight (calculated)

57408.7 Da

IEP (calculated)

9.917

GRAVY (calculated)

-0.337

Length

516 amino acids

Sequence
(BLAST)

001: MPQRRPRGRV RQVLSPVTQP AATARHASQN KPTPPPPPLL PRAHRRSPSS SILSPLVAMA VVDKAVAGGG EAQQREPEPE PAAEASTFAE LGICRELVEA
101: CDAMGWKQPT KIQAGAIPHA LQGRDVIGLG QTGSGKTGAF ALPIIQALLE HRQPFFACIM SPTRELAIQI AEQFEALGSA IGLVCSVLVG GVDRMQQVLS
201: IAKRPHIVVG TPGRLLDHLK DTKGFSLTKV KYLVLDEADK LLNLEFKESL DDILKVIPKE RRTYLFSATM TKKVSKLQRA CLRNPVKVEV SSKYSTVDTL
301: KQEWYFVPAD YKDCYLVHVL NELPGSMIMI FVRTCESTRL LALTLRNLGF KALSISGQMS QDKRLGALNK FKAKDFNILI CTDVASRGLD IQGVDVVMNY
401: DIPMNSKDYV HRVGRTARAG QSGYAVSFVN QYEAEWFKLI EQLLGREIPD RKVDMDEILI LREHISDSKR IALTKLREDG GHKKRRKAAE DDDDEEEEAP
501: RGNRQKPRSF KKSSRR

Best Arabidopsis Sequence Match ( AT5G60990.1 )
(BLAST)

001: MEEENEVVKT FAELGVREEL VKACERLGWK NPSKIQAEAL PFALEGKDVI GLAQTGSGKT GAFAIPILQA LLEYVYDSEP KKGRRPDPAF FACVLSPTRE
101: LAIQIAEQFE ALGADISLRC AVLVGGIDRM QQTIALGKRP HVIVATPGRL WDHMSDTKGF SLKSLKYLVL DEADRLLNED FEKSLNQILE EIPLERKTFL
201: FSATMTKKVR KLQRACLRNP VKIEAASKYS TVDTLKQQYR FVAAKYKDCY LVYILSEMPE STSMIFTRTC DGTRFLALVL RSLGFRAIPI SGQMTQSKRL
301: GALNKFKAGE CNILVCTDVA SRGLDIPSVD VVINYDIPTN SKDYIHRVGR TARAGRSGVG ISLVNQYELE WYIQIEKLIG KKLPEYPAEE DEVLSLLERV
401: AEAKKLSAMN MKESGGRKRR GEDDEESERF LGGNKDRGNK ERGGNKDKKS SKKFKR

Arabidopsis Description

RH10DEAD-box ATP-dependent RNA helicase 10 [Source:UniProtKB/Swiss-Prot;Acc:Q8GY84]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.