Factsheet for VIT_11s0016g00630.t01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH12590	Soybean	nucleus	68.67	75.87
KRH37539	Soybean	nucleus	66.67	74.21
PGSC0003DMT400006153	Potato	nucleus	64.67	72.66
Solyc07g042270.2.1	Tomato	nucleus	72.0	72.36
PGSC0003DMT400006154	Potato	nucleus	71.67	72.03
GSMUA_Achr7P18160_001	Banana	nucleus	65.0	66.78
Bra004584.1-P	Field mustard	nucleus	67.33	65.8
AT2G40700.1	Thale cress	nucleus	66.0	64.92
Os05t0110500-02	Rice	nucleus	62.5	63.45
EES18259	Sorghum	nucleus	63.17	63.17
TraesCS1A01G030500.1	Wheat	nucleus	63.17	61.93
TraesCS1D01G031400.1	Wheat	nucleus	63.17	61.93
TraesCS1B01G037600.1	Wheat	nucleus	62.67	61.04
Zm00001d010225_P001	Maize	plasma membrane	52.17	60.89
CDX79974	Canola	nucleus	67.67	59.01
CDY23886	Canola	plasma membrane	67.5	57.77
HORVU1Hr1G004510.5	Barley	plastid	62.67	56.97
VIT_17s0000g04310.t01	Wine grape	cytosol	32.5	35.45
VIT_01s0010g01890.t01	Wine grape	nucleus	21.17	30.9
VIT_19s0085g00510.t01	Wine grape	cytosol	23.17	28.43
VIT_11s0065g01090.t01	Wine grape	cytosol	23.33	25.97
VIT_13s0067g01900.t01	Wine grape	nucleus	23.17	23.36
VIT_06s0004g07260.t01	Wine grape	extracellular, vacuole	5.83	21.88
VIT_18s0001g14540.t01	Wine grape	nucleus	24.67	20.22
VIT_15s0046g01010.t01	Wine grape	plastid	24.17	18.86
VIT_02s0025g03950.t01	Wine grape	mitochondrion	22.67	18.04
VIT_05s0049g02360.t01	Wine grape	nucleus	21.17	16.12

Protein Annotations

EntrezGene:100250946	wikigene:100250946	Gene3D:3.40.50.300	MapMan:35.1	ProteinID:CCB51376	ProteinID:CCB51376.1
InterPro:DEAD/DEAH_box_helicase_dom	InterPro:DUF4217	UniProt:F6HGM8	EMBL:FN595756	GO:GO:0000166	GO:GO:0003674
GO:GO:0003676	GO:GO:0003723	GO:GO:0003824	GO:GO:0004004	GO:GO:0004386	GO:GO:0005488
GO:GO:0005524	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005730
GO:GO:0005737	GO:GO:0006139	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0010501
GO:GO:0016787	InterPro:Helicase_ATP-bd	InterPro:Helicase_C	InterPro:IPR001650	InterPro:IPR014001	InterPro:IPR014014
EntrezGene:LOC100250946	wikigene:LOC100250946	InterPro:P-loop_NTPase	PFAM:PF00270	PFAM:PF00271	PFAM:PF13959
ScanProsite:PS00039	PFscan:PS51192	PFscan:PS51194	PFscan:PS51195	PANTHER:PTHR24031	PANTHER:PTHR24031:SF54
InterPro:RNA-helicase_DEAD-box_CS	InterPro:RNA_helicase_DEAD_Q_motif	SMART:SM00487	SMART:SM00490	SMART:SM01178	SUPFAM:SSF52540
UniParc:UPI000198427E	ArrayExpress:VIT_11s0016g00630	EnsemblPlantsGene:VIT_11s0016g00630	EnsemblPlants:VIT_11s0016g00630.t01	RefSeq:XP_002277600	RefSeq:XP_002277600.1
SEG:seg	:	:	:	:	:

Description

RNA helicase [Source:UniProtKB/TrEMBL;Acc:F6HGM8]

Coordinates

chr11:+:613332..619959

Molecular Weight (calculated)

68689.5 Da

IEP (calculated)

10.035

GRAVY (calculated)

-0.365

Length

600 amino acids

Sequence
(BLAST)

001: MDRRKRTTEE EMKKTKQNSY NGESEIFASC SFSSLGLHPT LCDQLRERMG FEVPTIVQAE AIPVILAGRH VLVNAATGTG KTIAYLAPVI NHLHKYDPRI
101: ERSAGTFALV LVPTRELCMQ VYEILQKLLH RFHWIVPGYV MGGENRSKEK ARLRKGISIL VATPGRLLDH LKNTSSFLHT NLRWIIFDEA DRILELGFGK
201: EIEEILDLLG SRTNGPTIRE DAVTSEFQRQ NLLLSATLNE KVNHLAQISL ENPVTIGLDG KKMQPKPPLE HFGSVEFDVD EDSEKLHKII SPSNGDYKLP
301: AQLVQRYVKV PCGSRLVVLL SILKHLFERE ASQKIVVFFS TCDAVDFHYS LFSAFLWPAN LHPETEDRQM FLRFKTFQLH GNMKHEDRRT TFQTFKKEKS
401: ALLLSTDVAA RGLDFPKVRC IIQYDSPGEA SEYVHRVGRT ARLGERGDSL LFLQPVEMDY LQDLEKHGVS LTEYSLLKVL DSFPLSGQKH HIKKFISLEM
501: HPWSLYLQKA LESFIFAEPK MKKLAKDAFC SWVRAYTAHR GELKRIFQVK KLHLGHVAKS FALKDQPSLV GKSMQMQTKK RKRDQKQQGL SKRKKLARKT

Best Arabidopsis Sequence Match ( AT2G40700.1 )
(BLAST)

001: MMKRAQQSAR ETKQEAKDAS KAKSGLFASC SFSSLGLDTK LSDQLKERMG FEAPTLVQAQ AIPVILSGRD VLVNAPTGTG KTIAYLAPLI HHLQGHSPKV
101: DRSHGTFALV IVPTRELCLQ VYETLEKLLH RFHWIVPGYV MGGEKKAKEK ARLRKGISIL IATPGRLLDH LKNTASFVHK NLRWVIFDEA DSILELGYGK
201: EIEQIIKLLG SGQNEQGEED DIVPKGIQKQ NLLLSATLND KVNDLAKLSL DDPVMIGLDN TKLQQNLSIE SPAAPDSDAE DMVIHVNKSA NPLSEDYGIP
301: SQLVQRYLRV PCGARLVALL SVLKNLFERE ASQKVVVFFS TRDAVDFHYS LLSEFQWPPN SETEEEGTKE LFLKCKTFRL HGSMEQEDRR SAFGTFKTEK
401: QAVLLSTDVA ARGLDFPKVR CIIQYDCPGE ATEYVHRVGR TARIGEKGEA LLFLQPIEID YLKELKKHGA SLTEYPLMKV LDKFPIPGNM PRIKKVLSLE
501: SHPWVISLQR ALESLTYAEP KMKSLAKNAF VSWVRGYAAH KGELKSIFVV KKLHLGHVAK SFALREQPSL VGKSHHKETM KRKRDERQKG QQGKKRKKMS
601: GTGNRSTQKT

Arabidopsis Description

P-loop containing nucleoside triphosphate hydrolases superfamily protein [Source:TAIR;Acc:AT2G40700]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.