Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- plastid 3
- mitochondrion 1
- nucleus 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS7A01G151700.1 | Wheat | plastid | 91.68 | 97.06 |
| TraesCS7B01G055600.1 | Wheat | nucleus | 96.38 | 90.18 |
| OQU75979 | Sorghum | plastid | 80.94 | 82.84 |
| HORVU7Hr1G031190.2 | Barley | nucleus | 91.56 | 80.23 |
| Zm00001d045080_P001 | Maize | plastid | 78.65 | 79.71 |
| Zm00001d037086_P006 | Maize | nucleus, plastid | 77.8 | 72.88 |
| VIT_06s0004g00530.t01 | Wine grape | cytosol | 49.34 | 63.31 |
| GSMUA_Achr8P31340_001 | Banana | nucleus | 60.55 | 62.75 |
| PGSC0003DMT400033355 | Potato | cytosol | 6.88 | 62.64 |
| Solyc03g006420.2.1 | Tomato | nucleus | 58.14 | 58.0 |
| KRH23133 | Soybean | nucleus | 59.47 | 57.93 |
| AT4G14700.1 | Thale cress | plastid | 55.49 | 56.86 |
| PGSC0003DMT400033353 | Potato | nucleus, plastid | 51.03 | 56.55 |
| KRH10202 | Soybean | nucleus | 58.02 | 56.32 |
| CDY16697 | Canola | plastid | 54.64 | 56.0 |
| Bra029471.1-P | Field mustard | plastid | 54.76 | 55.84 |
| AT4G12620.1 | Thale cress | plastid | 54.76 | 55.84 |
| CDY62377 | Canola | plastid | 54.89 | 55.76 |
| VIT_06s0004g02050.t01 | Wine grape | nucleus | 58.62 | 53.52 |
| VIT_13s0175g00030.t01 | Wine grape | extracellular | 7.96 | 42.04 |
| TraesCS3D01G362000.1 | Wheat | plastid | 13.63 | 22.65 |
Protein Annotations
| Gene3D:1.10.8.1280 | MapMan:13.2.1.1.1 | Gene3D:3.30.40.10 | Gene3D:3.40.50.300 | InterPro:AAA+_ATPase | InterPro:ATPase_AAA_core |
| InterPro:BAH_dom | GO:GO:0000166 | GO:GO:0003674 | GO:GO:0003682 | GO:GO:0005488 | GO:GO:0005524 |
| InterPro:IPR001025 | InterPro:IPR013083 | InterPro:IPR019787 | InterPro:ORC1 | InterPro:P-loop_NTPase | PFAM:PF00004 |
| PFAM:PF00628 | PFAM:PF01426 | ScanProsite:PS01359 | PFscan:PS50016 | PFscan:PS51038 | PANTHER:PTHR10763 |
| PANTHER:PTHR10763:SF23 | SMART:SM00249 | SMART:SM00382 | SMART:SM00439 | SUPFAM:SSF52540 | SUPFAM:SSF57903 |
| EnsemblPlantsGene:TraesCS7D01G153500 | EnsemblPlants:TraesCS7D01G153500.1 | InterPro:Zinc_finger_PHD-type_CS | InterPro:Znf_FYVE_PHD | InterPro:Znf_PHD | InterPro:Znf_PHD-finger |
| InterPro:Znf_RING/FYVE/PHD | TIGR:cd00009 | SEG:seg | : | : | : |
Description
No Description!
Coordinates
chr7D:+:101718225..101725326
Molecular Weight (calculated)
92040.0 Da
IEP (calculated)
8.363
GRAVY (calculated)
-0.566
Length
829 amino acids
Sequence
(BLAST)
(BLAST)
001: MDXXXXXXXX XXXXKPGPSP SKAAAAAAAQ MDFSTPSKPA PTPTPRRKSK PVPYAPPASP ATPSAVRRSR RLLDTPTKDL SEAALFETPA KPKPAPAPTL
101: KRKRAAPSPS PKTPARAEPK RKRQRRAPAK RAFYRKVVYD GGEFAAGDDV YVKRLEGAES DAEDPEEPED CRVCFRAGGG VMVECDACLG GFHLRCVRPP
201: LRRVPEGDWA CPYCEAEREG RAMDRPKPPV GKKIKRTAKE KLLDSDLWAA RIESLRREPD GAFWAKVRWY TIPEETAAGR QPHNLRRELY RTNALGDIEM
301: ESIVRHCFVM SPKEYRDATN DGDDVFYCEY EYDVHWHNFK RLADIDDEPE TKEDPSDEPY NAANDYNSDT NEDSEYDEED EPAARCSARK NQSNEKILAA
401: NSWKGRIYGL QKIGIRKIPE HVRCHQKTAL EKAKATLLLA TLPKSLPCRD KEMEEISTFV KDAICNDHCL GRCLYIHGVP GTGKTMSVLA VMRRLRSEFD
501: SGALRPYCFI EINGLKLASP ENIYKVIYEQ LSGHRVGWKK ALHYLTEHFS DGKKIGKQAN QPIVLLIDEL DLLLTRNQSV LYNILDWPTK PNSNLVIIGI
601: ANTMDLPEKL LPRISSRMGI QRLCFGPYNY RQLQEIITSR LKGINAFEDQ AIEFASRKVA AMSGDARRAL EICRRAAEFA DYRVKQFQQV EQTSSSANSG
701: NGFVCMGDIE DAIQEVFQAP HIQVMKNCPK FGKVILAAMV HELYRSGLGE VLFDKLAATV FSWCHVNREL LPGYDTLLKI CCKLGESKIV LCEEGTKHKL
801: QKLQLNYPSD DVTFALKESP DLPWLSKYL
101: KRKRAAPSPS PKTPARAEPK RKRQRRAPAK RAFYRKVVYD GGEFAAGDDV YVKRLEGAES DAEDPEEPED CRVCFRAGGG VMVECDACLG GFHLRCVRPP
201: LRRVPEGDWA CPYCEAEREG RAMDRPKPPV GKKIKRTAKE KLLDSDLWAA RIESLRREPD GAFWAKVRWY TIPEETAAGR QPHNLRRELY RTNALGDIEM
301: ESIVRHCFVM SPKEYRDATN DGDDVFYCEY EYDVHWHNFK RLADIDDEPE TKEDPSDEPY NAANDYNSDT NEDSEYDEED EPAARCSARK NQSNEKILAA
401: NSWKGRIYGL QKIGIRKIPE HVRCHQKTAL EKAKATLLLA TLPKSLPCRD KEMEEISTFV KDAICNDHCL GRCLYIHGVP GTGKTMSVLA VMRRLRSEFD
501: SGALRPYCFI EINGLKLASP ENIYKVIYEQ LSGHRVGWKK ALHYLTEHFS DGKKIGKQAN QPIVLLIDEL DLLLTRNQSV LYNILDWPTK PNSNLVIIGI
601: ANTMDLPEKL LPRISSRMGI QRLCFGPYNY RQLQEIITSR LKGINAFEDQ AIEFASRKVA AMSGDARRAL EICRRAAEFA DYRVKQFQQV EQTSSSANSG
701: NGFVCMGDIE DAIQEVFQAP HIQVMKNCPK FGKVILAAMV HELYRSGLGE VLFDKLAATV FSWCHVNREL LPGYDTLLKI CCKLGESKIV LCEEGTKHKL
801: QKLQLNYPSD DVTFALKESP DLPWLSKYL
001: MASSLSSKAK TFKSPTKTPT KMYRKSYLSP SSTSLTPPQT PETLTPLRRS SRHVSRKINL GNDPIDLPGK ESVEEINLIR KPRKRTNDIV VAEKSKKKKI
101: DPEVSFSPVS PIRSETKKTK KKKRVYYNKV EFDETEFEIG DDVYVKRTED ANPDEEEEED PEIEDCQICF KSHTNTIMIE CDDCLGGFHL NCLKPPLKEV
201: PEGDWICQFC EVKKSGQTLV VVPKPPEGKK LARTMKEKLL SSDLWAARIE KLWKEVDDGV YWIRARWYMI PEETVLGRQR HNLKRELYLT NDFADIEMEC
301: VLRHCFVKCP KEFSKASNDG DDVFLCEYEY DVHWGSFKRV AELADGDEDS DQEWNGRKEE EIDYSDEEIE FDDEESVRGV SKSKRGGANS RKGRFFGLEK
401: VGMKRIPEHV RCHKQSELEK AKATLLLATR PKSLPCRSKE MEEITAFIKG SISDDQCLGR CMYIHGVPGT GKTISVLSVM KNLKAEVEAG SVSPYCFVEI
501: NGLKLASPEN IYSVIYEGLS GHRVGWKKAL QSLNERFAEG KKIGKENEKP CILLIDELDV LVTRNQSVLY NILDWPTKPN SKLVVLGIAN TMDLPEKLLP
601: RISSRMGIQR LCFGPYNHRQ LQEIISTRLE GINAFEKTAI EFASRKVAAI SGDARRALEI CRRAAEVADY RLKKSNISAK SQLVIMADVE VAIQEMFQAP
701: HIQVMKSVSK LSRIFLTAMV HELYKTGMAE TSFDRVATTV SSICLTNGEA FPGWDILLKI GCDLGECRIV LCEPGEKHRL QKLQLNFPSD DVAFALKDNK
801: DLPWLANYL
101: DPEVSFSPVS PIRSETKKTK KKKRVYYNKV EFDETEFEIG DDVYVKRTED ANPDEEEEED PEIEDCQICF KSHTNTIMIE CDDCLGGFHL NCLKPPLKEV
201: PEGDWICQFC EVKKSGQTLV VVPKPPEGKK LARTMKEKLL SSDLWAARIE KLWKEVDDGV YWIRARWYMI PEETVLGRQR HNLKRELYLT NDFADIEMEC
301: VLRHCFVKCP KEFSKASNDG DDVFLCEYEY DVHWGSFKRV AELADGDEDS DQEWNGRKEE EIDYSDEEIE FDDEESVRGV SKSKRGGANS RKGRFFGLEK
401: VGMKRIPEHV RCHKQSELEK AKATLLLATR PKSLPCRSKE MEEITAFIKG SISDDQCLGR CMYIHGVPGT GKTISVLSVM KNLKAEVEAG SVSPYCFVEI
501: NGLKLASPEN IYSVIYEGLS GHRVGWKKAL QSLNERFAEG KKIGKENEKP CILLIDELDV LVTRNQSVLY NILDWPTKPN SKLVVLGIAN TMDLPEKLLP
601: RISSRMGIQR LCFGPYNHRQ LQEIISTRLE GINAFEKTAI EFASRKVAAI SGDARRALEI CRRAAEVADY RLKKSNISAK SQLVIMADVE VAIQEMFQAP
701: HIQVMKSVSK LSRIFLTAMV HELYKTGMAE TSFDRVATTV SSICLTNGEA FPGWDILLKI GCDLGECRIV LCEPGEKHRL QKLQLNFPSD DVAFALKDNK
801: DLPWLANYL
Arabidopsis Description
ORC1AOrigin of replication complex subunit 1A [Source:UniProtKB/Swiss-Prot;Acc:Q710E8]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.