Factsheet for TraesCS2D01G023500.1

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum

Predictor Summary:

extracellular 4
golgi 4
plasma membrane 4
endoplasmic reticulum 6
vacuole 4
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	endoplasmic reticulum
Any Predictor:	plastid, secretory
iPSORT:	secretory
MultiLoc:	endoplasmic reticulum
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plastid
YLoc:	endoplasmic reticulum

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS1A01G130700.1
TraesCS1A01G249400.1
TraesCS1B01G156600.1
TraesCS1B01G260100.1
TraesCS1B01G417700.1
TraesCS1D01G139000.1
TraesCS1D01G248900.1
TraesCS2A01G022200.1
TraesCS2B01G030600.1
TraesCS2D01G023000.1
TraesCS2D01G023500.1
TraesCS3A01G118400.1
TraesCS3B01G137500.1
TraesCS3D01G120300.1
TraesCS4A01G306400.1
TraesCS4B01G008300.1
TraesCS4D01G007000.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G31270.1	TraesCS1A01G130700.1	AT1G08260.1	22773747
AT2G31270.1	TraesCS1B01G156600.1	AT1G08260.1	22773747
AT2G31270.1	TraesCS1B01G417700.1	AT1G08260.1	22773747
AT2G31270.1	TraesCS1D01G139000.1	AT1G08260.1	22773747
AT2G31270.1	TraesCS2A01G022200.1	AT2G31270.1	22773747
AT2G31270.1	TraesCS2B01G030600.1	AT2G31270.1	22773747
AT2G31270.1	TraesCS2D01G023000.1	AT2G31270.1	22773747
AT2G31270.1	TraesCS2D01G023500.1	AT2G31270.1	22773747
AT2G31270.1	TraesCS1A01G249400.1	AT5G13060.1	18818695
AT2G31270.1	TraesCS1B01G260100.1	AT5G13060.1	18818695
AT2G31270.1	TraesCS1D01G248900.1	AT5G13060.1	18818695
AT2G31270.1	TraesCS3A01G118400.1	AT5G22110.1	22773747
AT2G31270.1	TraesCS3B01G137500.1	AT5G22110.1	22773747
AT2G31270.1	TraesCS3D01G120300.1	AT5G22110.1	22773747
AT3G54710.1	TraesCS1A01G130700.1	AT1G08260.1	22773747
AT3G54710.1	TraesCS1B01G156600.1	AT1G08260.1	22773747
AT3G54710.1	TraesCS1B01G417700.1	AT1G08260.1	22773747
AT3G54710.1	TraesCS1D01G139000.1	AT1G08260.1	22773747
AT3G54710.1	TraesCS4A01G306400.1	AT2G27470.1	22773747
AT3G54710.1	TraesCS4B01G008300.1	AT2G27470.1	22773747
AT3G54710.1	TraesCS4D01G007000.1	AT2G27470.1	22773747
AT3G54710.1	TraesCS2A01G022200.1	AT3G54710.1	22773747
AT3G54710.1	TraesCS2B01G030600.1	AT3G54710.1	22773747
AT3G54710.1	TraesCS2D01G023000.1	AT3G54710.1	22773747
AT3G54710.1	TraesCS2D01G023500.1	AT3G54710.1	22773747
AT3G54710.1	TraesCS1A01G249400.1	AT5G13060.1	18818695
AT3G54710.1	TraesCS1B01G260100.1	AT5G13060.1	18818695
AT3G54710.1	TraesCS1D01G248900.1	AT5G13060.1	18818695
AT3G54710.1	TraesCS3A01G118400.1	AT5G22110.1	22773747
AT3G54710.1	TraesCS3B01G137500.1	AT5G22110.1	22773747
AT3G54710.1	TraesCS3D01G120300.1	AT5G22110.1	22773747

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
HORVU2Hr1G003370.11	Barley	cytosol	81.01	75.64
TraesCS2D01G023000.1	Wheat	cytosol, plastid	91.53	74.07
TraesCS2A01G022200.1	Wheat	plastid	89.24	67.47
TraesCS2B01G030600.1	Wheat	plastid	89.02	67.07
Os04t0185100-01	Rice	cytosol, mitochondrion, plastid	60.41	44.9
EER89201	Sorghum	nucleus	58.58	44.52
Zm00001d045354_P002	Maize	nucleus	55.84	42.58
GSMUA_Achr10P...	Banana	nucleus	42.79	34.31
GSMUA_Achr8P03390_001	Banana	cytosol, nucleus, plastid	30.21	34.29
CDY67450	Canola	cytosol	19.45	31.72
HORVU4Hr1G047140.6	Barley	plastid	15.33	30.73
Bra014795.1-P	Field mustard	cytosol	24.71	30.68
VIT_07s0005g03090.t01	Wine grape	nucleus	36.61	27.73
AT2G31270.1	Thale cress	nucleus, plastid	35.01	26.8
PGSC0003DMT400028257	Potato	nucleus, plastid	35.01	26.24
Solyc01g006140.2.1	Tomato	nucleus	34.1	26.05
Solyc06g008510.2.1	Tomato	nucleus, plastid	34.32	25.73
CDX76134	Canola	cytosol, plastid	26.77	25.05
CDX84793	Canola	nucleus, plastid	31.58	25.05
Bra022834.1-P	Field mustard	nucleus, plastid	31.58	25.05
Bra014797.1-P	Field mustard	cytosol, plastid	26.09	24.78
CDY15409	Canola	nucleus, plastid	27.92	24.6
CDY23948	Canola	nucleus, plastid	31.12	24.59
CDX76137	Canola	cytosol, plastid	26.09	24.15
CDY13226	Canola	cytosol, plastid	26.32	24.11
CDY24744	Canola	nucleus	32.04	23.89
KRH32170	Soybean	plastid	32.27	23.66
Bra018272.1-P	Field mustard	nucleus	31.12	23.17
CDY10780	Canola	nucleus	30.89	23.0
AT3G54710.1	Thale cress	cytosol, plastid	24.71	22.22
KRH19542	Soybean	nucleus	31.12	21.97
TraesCS1D01G173500.1	Wheat	nucleus	26.77	20.97
GSMUA_Achr9P25190_001	Banana	endoplasmic reticulum, vacuole	41.88	19.16

Protein Annotations

EnsemblPlants:TraesCS2D01G023500.1	EnsemblPlantsGene:TraesCS2D01G023500	Gene3D:1.10.10.1420	InterPro:CDT1_Gemini-bd-like	InterPro:Cdt1_C	InterPro:WH_DNA-bd_sf
PANTHER:PTHR28637	PANTHER:PTHR28637:SF5	PFAM:PF16679	SEG:seg	SignalP:SignalP-noTM	SMART:SM01075
SUPFAM:SSF46785	TIGR:cd08767	TMHMM:TMhelix	MapMan:13.2.1.3	:	:

Description

No Description!

Coordinates

chr2D:+:10523506..10525256

Molecular Weight (calculated)

48537.6 Da

IEP (calculated)

8.061

GRAVY (calculated)

-0.351

Length

437 amino acids

Sequence
(BLAST)

001: MEMLVKIAEV LVLIALMMMA PGGVPAPSEA RGRFTYGHLA QLKYIMPEAI VINKVLLRDD KTCCMKPDLQ VNLLVDSVED SAMQKGETRY SALRRMFRQR
101: LVDFFRKHPE GDDIPEHELP HPFTQTKSSV AQSTPRVVTE VVFAAPSPSL SEQPAVALSH MSQSFKRRFS QRSSTCPATA SKTGLPPKAE STAPSPLGRK
201: VMLSSTSGGI DHESQVQEKS SKDAALRFGV TEGTPAKFAS TPVRSMAATP NLETPLRPIS ATVCDTPPLK TVKRSARAKL FMTPTKDASR MEEENQSMSS
301: TSPSDGDDEL LGFLPKSLLQ SVKEKEKRTL EEKETGYADQ VQRQKLISCL PSTFDIIFLI YQSRQRTVLT KEELIHKIIE SNPKIVDKGE VEEQVRLLLE
401: FVPEWISEKI ARNGDVLCCI DTALSQFEVR QRLSGVE

Best Arabidopsis Sequence Match ( AT2G31270.1 )
(BLAST)

001: MSTPGSSRSI PFKSKKRLVM DSPSSKSQTG NPNPSSVALP TPEKPLENML SRSRNRSVAL SVKEIRQAAG SRRRSEDPVA SSAKSRLFFD SSSSSPSKRK
101: SSNKNAEKEK LPEKYENLGK FFEALDNSML LSKLRGSKPT FSNISKQIEH LTERRFCYSH LAQIKHILPE AIEIKRVLIH DETTCCMKPD LHVTLNADAV
201: EYNDKSKSES KKIALRKVFR ARLADFVKAH PQGDEVPEEP LPEPFNRRKP VENSNVEVKR VSSLMEEMAS IPASKLFSSP ITSTPVKTTS SLAKPTSSQI
301: NIAPTPTKPT STPAKQTLSE INILPTPVKP VSTLAKFPST PAIIDSTPVI TATPPEFAST PARLMSTSLA ARPLKRSNGH TNPDDISADP PTKLVRRSLS
401: LNFDSYPEDE RTMDFTDDIP IDQVPEEDVS SDDEILSILP DKLRHAIKEQ ERKAIEDQNP AISLAKRRRK MIACLPKLFN VIHYLIQSIR RWVITKEELV
501: HKIIAGHSDI TDRKEVEEQL ILLQEIVPEW MSEKKSSSGD VLVCINKLAS PLTIRSRLEE ENKQEMAPLL S

Arabidopsis Description

CDT1ACDT1-like protein a, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9SJW9]
SUBAcon: [nucleus,plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.