Factsheet for Os04t0185100-01

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, plastid, cytosol

Predictor Summary:

nucleus 2
mitochondrion 3
plastid 1
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Os02t0511900-00
Os02t0511901-00
Os04t0185100-01
Os05t0160800-01
Os05t0398100-01
Os09t0568200-01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G31270.1	Os02t0511900-00	AT1G08260.1	22773747
AT2G31270.1	Os02t0511901-00	AT1G08260.1	22773747
AT2G31270.1	Os04t0185100-01	AT2G31270.1	22773747
AT2G31270.1	Os05t0398100-01	AT5G13060.1	18818695
AT2G31270.1	Os05t0160800-01	AT5G22110.1	22773747
AT3G54710.1	Os02t0511900-00	AT1G08260.1	22773747
AT3G54710.1	Os02t0511901-00	AT1G08260.1	22773747
AT3G54710.1	Os09t0568200-01	AT2G27470.1	22773747
AT3G54710.1	Os04t0185100-01	AT3G54710.1	22773747
AT3G54710.1	Os05t0398100-01	AT5G13060.1	18818695
AT3G54710.1	Os05t0160800-01	AT5G22110.1	22773747

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
HORVU2Hr1G003370.11	Barley	cytosol	52.38	65.81
EER89201	Sorghum	nucleus	61.39	62.78
TraesCS2D01G023000.1	Wheat	cytosol, plastid	56.12	61.11
TraesCS2D01G023500.1	Wheat	endoplasmic reticulum	44.9	60.41
TraesCS2B01G030600.1	Wheat	plastid	59.18	60.0
Zm00001d045354_P002	Maize	nucleus	57.99	59.51
TraesCS2A01G022200.1	Wheat	plastid	56.63	57.61
GSMUA_Achr10P...	Banana	nucleus	40.82	44.04
HORVU4Hr1G047140.6	Barley	plastid	15.31	41.28
GSMUA_Achr8P03390_001	Banana	cytosol, nucleus, plastid	23.81	36.36
VIT_07s0005g03090.t01	Wine grape	nucleus	33.33	33.97
Solyc06g008510.2.1	Tomato	nucleus, plastid	32.14	32.42
PGSC0003DMT400028257	Potato	nucleus, plastid	31.8	32.08
Solyc01g006140.2.1	Tomato	nucleus	31.12	31.99
AT2G31270.1	Thale cress	nucleus, plastid	30.78	31.7
CDX84793	Canola	nucleus, plastid	29.25	31.22
Bra022834.1-P	Field mustard	nucleus, plastid	29.25	31.22
CDY67450	Canola	cytosol	14.12	30.97
CDY23948	Canola	nucleus, plastid	28.74	30.56
CDY24744	Canola	nucleus	29.93	30.03
CDX76134	Canola	cytosol, plastid	23.81	29.98
Bra014797.1-P	Field mustard	cytosol, plastid	23.3	29.78
CDY15409	Canola	nucleus, plastid	25.0	29.64
Bra014795.1-P	Field mustard	cytosol	17.69	29.55
Bra018272.1-P	Field mustard	nucleus	29.42	29.47
KRH32170	Soybean	plastid	29.76	29.36
CDY10780	Canola	nucleus	29.25	29.3
CDX76137	Canola	cytosol, plastid	23.47	29.24
CDY13226	Canola	cytosol, plastid	23.3	28.72
AT3G54710.1	Thale cress	cytosol, plastid	22.96	27.78
KRH19542	Soybean	nucleus	28.91	27.46
GSMUA_Achr9P25190_001	Banana	endoplasmic reticulum, vacuole	41.84	25.76
Os10t0489900-01	Rice	nucleus	23.3	23.91

Protein Annotations

Gene3D:1.10.10.1420	MapMan:13.2.1.3	EntrezGene:4335111	EMBL:AK119406	ProteinID:BAF14105.1	ProteinID:BAS87995.1
ProteinID:CAD39469.2	ProteinID:CAE02517.2	InterPro:CDT1_Gemini-bd-like	InterPro:Cdt1_C	GO:GO:0000076	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005737	GO:GO:0006139	GO:GO:0006259
GO:GO:0006260	GO:GO:0007049	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
GO:GO:0016043	GO:GO:0051276	EnsemblPlantsGene:Os04g0185100	EnsemblPlants:Os04t0185100-01	PFAM:PF08839	PFAM:PF16679
PANTHER:PTHR28637	PANTHER:PTHR28637:SF5	UniProt:Q7X7L0	SMART:SM01075	SUPFAM:SSF46785	UniParc:UPI00001B1355
InterPro:WH_DNA-bd_sf	RefSeq:XP_015634451.1	SEG:seg	:	:	:

Description

DNA replication factor CDT1-like domain containing protein. (Os04t0185100-01)

Coordinates

chr4:-:5785639..5788514

Molecular Weight (calculated)

64110.9 Da

IEP (calculated)

9.861

GRAVY (calculated)

-0.374

Length

588 amino acids

Sequence
(BLAST)

001: MESATPSKRA KTAAGVATPQ KMGKAAAAAA LADQFLTPEK PTPKVAAAAA AAEQIWTPEK PKQPSAAERR ARSSGGVAFS VKGVRRAALE LRRRSERGAA
101: SPAAAAAAAE DELEAVERQL GVGPAPVRSP VKRTAKLPES YEMLCEFFNC FESSTRLLRM KGSKASFPNI CASIQHLSER RFTYSHLAQL KYIMPEVIVI
201: NKILLRDETT CCMKPDLQVN LLVDAVEGVA KQKGETGYSA LRRIFRQRLV DYFRDHPEGH DIPEHELPHP FGPTRSSAPQ AIQEDIPKTV SALPLSSATD
301: RQPVAMSHMP NSFKRMFSQR SAAAAAATTS TTSPLSKVEP SITSPLSRKS LLGSPVSGSV SLVRESEGQE KSVEGVAFQS GVSEGTPAKF ASTPVRLMAE
401: TPVLQTPKRP VSGTGYDTPP LKMAKRSART KLFMTPTKDA SSMDEKKQST SASTLDGDDE LLSFLPKSLL QSVKDKENRA LVEKQTGFAD HIKREKLIAS
501: LPSIFDIIFL IYQSRQRTVM TKQELIHKII ASNPKIVDRG EVEDQLKLLE EIIPDWISEK TARTGDVLCC VDTAMSQAEI RQRLYAAE

Best Arabidopsis Sequence Match ( AT2G31270.1 )
(BLAST)

001: MSTPGSSRSI PFKSKKRLVM DSPSSKSQTG NPNPSSVALP TPEKPLENML SRSRNRSVAL SVKEIRQAAG SRRRSEDPVA SSAKSRLFFD SSSSSPSKRK
101: SSNKNAEKEK LPEKYENLGK FFEALDNSML LSKLRGSKPT FSNISKQIEH LTERRFCYSH LAQIKHILPE AIEIKRVLIH DETTCCMKPD LHVTLNADAV
201: EYNDKSKSES KKIALRKVFR ARLADFVKAH PQGDEVPEEP LPEPFNRRKP VENSNVEVKR VSSLMEEMAS IPASKLFSSP ITSTPVKTTS SLAKPTSSQI
301: NIAPTPTKPT STPAKQTLSE INILPTPVKP VSTLAKFPST PAIIDSTPVI TATPPEFAST PARLMSTSLA ARPLKRSNGH TNPDDISADP PTKLVRRSLS
401: LNFDSYPEDE RTMDFTDDIP IDQVPEEDVS SDDEILSILP DKLRHAIKEQ ERKAIEDQNP AISLAKRRRK MIACLPKLFN VIHYLIQSIR RWVITKEELV
501: HKIIAGHSDI TDRKEVEEQL ILLQEIVPEW MSEKKSSSGD VLVCINKLAS PLTIRSRLEE ENKQEMAPLL S

Arabidopsis Description

CDT1ACDT1-like protein a, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9SJW9]
SUBAcon: [plastid,nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.