Factsheet for Bra018272.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
plastid 3

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus, plastid
BaCelLo:	nucleus
ChloroP:	plastid
MultiLoc:	nucleus
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra000520.1-P
Bra008860.1-P
Bra018272.1-P
Bra018641.1-P
Bra022834.1-P
Bra023389.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G31270.1	Bra018641.1-P	AT1G08260.1	22773747
AT2G31270.1	Bra018272.1-P	AT2G31270.1	22773747
AT2G31270.1	Bra022834.1-P	AT2G31270.1	22773747
AT2G31270.1	Bra008860.1-P	AT5G13060.1	18818695
AT2G31270.1	Bra023389.1-P	AT5G13060.1	18818695
AT2G31270.1	Bra000520.1-P	AT5G22110.1	22773747

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY10780	Canola	nucleus	98.98	98.98
Bra022834.1-P	Field mustard	nucleus, plastid	69.34	73.87
AT2G31270.1	Thale cress	nucleus, plastid	64.05	65.85
VIT_07s0005g03090.t01	Wine grape	nucleus	39.86	40.55
Bra014795.1-P	Field mustard	cytosol	23.68	39.49
Bra014797.1-P	Field mustard	cytosol, plastid	30.83	39.35
Solyc06g008510.2.1	Tomato	nucleus, plastid	37.31	37.56
KRH32170	Soybean	plastid	37.99	37.42
PGSC0003DMT400028257	Potato	nucleus, plastid	36.29	36.54
GSMUA_Achr10P...	Banana	nucleus	33.22	35.78
Solyc01g006140.2.1	Tomato	nucleus	34.58	35.49
KRH19542	Soybean	nucleus	37.31	35.38
EER89201	Sorghum	nucleus	31.86	32.52
Zm00001d045354_P002	Maize	nucleus	31.69	32.46
HORVU2Hr1G003370.11	Barley	cytosol	24.87	31.2
TraesCS2D01G023500.1	Wheat	endoplasmic reticulum	23.17	31.12
TraesCS2D01G023000.1	Wheat	cytosol, plastid	28.45	30.93
Os04t0185100-01	Rice	cytosol, mitochondrion, plastid	29.47	29.42
TraesCS2A01G022200.1	Wheat	plastid	28.79	29.24
TraesCS2B01G030600.1	Wheat	plastid	28.45	28.79
GSMUA_Achr8P03390_001	Banana	cytosol, nucleus, plastid	18.06	27.53
HORVU4Hr1G047140.6	Barley	plastid	9.88	26.61
GSMUA_Achr9P25190_001	Banana	endoplasmic reticulum, vacuole	31.35	19.27

Protein Annotations

EnsemblPlants:Bra018272.1	EnsemblPlants:Bra018272.1-P	EnsemblPlantsGene:Bra018272	Gene3D:1.10.10.1420	InterPro:CDT1_Gemini-bd-like	InterPro:Cdt1_C
InterPro:WH_DNA-bd_sf	PANTHER:PTHR28637	PANTHER:PTHR28637:SF6	PFAM:PF08839	PFAM:PF16679	SEG:seg
SMART:SM01075	SUPFAM:SSF46785	UniParc:UPI00025479D3	UniProt:M4DP32	MapMan:13.2.1.3	:

Description

AT2G31270 (E=3e-207) ATCDT1A, CDT1A, CDT1 | CDT1A (ARABIDOPSIS HOMOLOG OF YEAST CDT1 A); cyclin-dependent protein kinase/ protein binding

Coordinates

chrA05:+:7062301..7064844

Molecular Weight (calculated)

64288.2 Da

IEP (calculated)

8.753

GRAVY (calculated)

-0.561

Length

587 amino acids

Sequence
(BLAST)

001: MSASGSSGSI PFKSKKRLLD SPSSKSQTGN PNQPAVPFPT PEKPPEAMHT RSRNRSVALS VKEIRQAAGS RRRSEDTVGK ASSARSQLLF SSNDDSSSSA
101: SKRKNTDKEK LPEKYEILGK FFDALDSTIV LSRLRGSKPI FSNISGKIEH LTERRFCYSH LAQIKHILPE AVEVKRVLIH DEATSCMKPD LHVTLNAGAV
201: EENGNSKSES KKKISLRKVF RARLADFVKS HPQGDEVPEE QLPELFNRKK PNEDSKAEVK SAGNLMEEMA SIPAAKLISS FIKVPSTPVN AKPQISIAPT
301: ATPALSKINL APTPVKAVST PARLPSTPAK IDSTPVKALS VPASVLSTPA KIDSAPVIVA STPPECASTP ARVYSTSLAA RLQKRSSGDT SPDDVSADPP
401: AKLARRSSLS SSRSLNFDSF TEEEEADMDA TNADEDNDQV PEEDESSDDE ILSILPDELR QSIKEQERKA IEDANPAISE AKRRRKMIAC LPKLFNVIHY
501: LIQSIRRWVI TKEELVHKII AGHSDITDRK EVEEQLILMQ ELVPEWISEK RSSSGDLLVC INKLASPQTI RSHLEEENKK AVAPPCP

Best Arabidopsis Sequence Match ( AT2G31270.1 )
(BLAST)

001: MSTPGSSRSI PFKSKKRLVM DSPSSKSQTG NPNPSSVALP TPEKPLENML SRSRNRSVAL SVKEIRQAAG SRRRSEDPVA SSAKSRLFFD SSSSSPSKRK
101: SSNKNAEKEK LPEKYENLGK FFEALDNSML LSKLRGSKPT FSNISKQIEH LTERRFCYSH LAQIKHILPE AIEIKRVLIH DETTCCMKPD LHVTLNADAV
201: EYNDKSKSES KKIALRKVFR ARLADFVKAH PQGDEVPEEP LPEPFNRRKP VENSNVEVKR VSSLMEEMAS IPASKLFSSP ITSTPVKTTS SLAKPTSSQI
301: NIAPTPTKPT STPAKQTLSE INILPTPVKP VSTLAKFPST PAIIDSTPVI TATPPEFAST PARLMSTSLA ARPLKRSNGH TNPDDISADP PTKLVRRSLS
401: LNFDSYPEDE RTMDFTDDIP IDQVPEEDVS SDDEILSILP DKLRHAIKEQ ERKAIEDQNP AISLAKRRRK MIACLPKLFN VIHYLIQSIR RWVITKEELV
501: HKIIAGHSDI TDRKEVEEQL ILLQEIVPEW MSEKKSSSGD VLVCINKLAS PLTIRSRLEE ENKQEMAPLL S

Arabidopsis Description

CDT1ACDT1-like protein a, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9SJW9]
SUBAcon: [plastid,nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.