Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- mitochondrion 1
- plastid 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| GSMUA_Achr8P03390_001 | Banana | cytosol, nucleus, plastid | 34.68 | 49.09 |
| HORVU2Hr1G003370.11 | Barley | cytosol | 39.08 | 45.51 |
| EER89201 | Sorghum | nucleus | 46.24 | 43.83 |
| TraesCS2D01G023000.1 | Wheat | cytosol, plastid | 42.94 | 43.33 |
| TraesCS2D01G023500.1 | Wheat | endoplasmic reticulum | 34.31 | 42.79 |
| Zm00001d045354_P002 | Maize | nucleus | 44.95 | 42.76 |
| Os04t0185100-01 | Rice | cytosol, mitochondrion, plastid | 44.04 | 40.82 |
| TraesCS2B01G030600.1 | Wheat | plastid | 43.3 | 40.69 |
| TraesCS2A01G022200.1 | Wheat | plastid | 43.12 | 40.66 |
| VIT_07s0005g03090.t01 | Wine grape | nucleus | 42.2 | 39.86 |
| Solyc06g008510.2.1 | Tomato | nucleus, plastid | 38.9 | 36.36 |
| PGSC0003DMT400028257 | Potato | nucleus, plastid | 38.53 | 36.02 |
| AT2G31270.1 | Thale cress | nucleus, plastid | 36.51 | 34.85 |
| Solyc01g006140.2.1 | Tomato | nucleus | 36.51 | 34.79 |
| CDY24744 | Canola | nucleus | 36.88 | 34.3 |
| CDX84793 | Canola | nucleus, plastid | 34.31 | 33.94 |
| Bra022834.1-P | Field mustard | nucleus, plastid | 34.31 | 33.94 |
| GSMUA_Achr9P25190_001 | Banana | endoplasmic reticulum, vacuole | 59.45 | 33.93 |
| CDY10780 | Canola | nucleus | 35.78 | 33.22 |
| Bra018272.1-P | Field mustard | nucleus | 35.78 | 33.22 |
| CDY23948 | Canola | nucleus, plastid | 33.39 | 32.91 |
| CDY67450 | Canola | cytosol | 16.15 | 32.84 |
| CDY15409 | Canola | nucleus, plastid | 29.72 | 32.66 |
| HORVU4Hr1G047140.6 | Barley | plastid | 13.03 | 32.57 |
| AT3G54710.1 | Thale cress | cytosol, plastid | 28.26 | 31.69 |
| Bra014797.1-P | Field mustard | cytosol, plastid | 26.61 | 31.52 |
| CDX76134 | Canola | cytosol, plastid | 26.79 | 31.26 |
| Bra014795.1-P | Field mustard | cytosol | 20.18 | 31.25 |
| CDX76137 | Canola | cytosol, plastid | 26.79 | 30.93 |
| KRH32170 | Soybean | plastid | 33.76 | 30.87 |
| CDY13226 | Canola | cytosol, plastid | 26.79 | 30.61 |
| KRH19542 | Soybean | nucleus | 33.03 | 29.08 |
| GSMUA_Achr2P10650_001 | Banana | nucleus | 25.14 | 24.04 |
Protein Annotations
| EnsemblPlants:GSMUA_Achr10P09080_001 | EnsemblPlants:GSMUA_Achr10T09080_001 | EnsemblPlantsGene:GSMUA_Achr10G09080_001 | Gene3D:1.10.10.1420 | InterPro:CDT1_Gemini-bd-like | InterPro:Cdt1_C |
| InterPro:WH_DNA-bd_sf | PANTHER:PTHR28637 | PANTHER:PTHR28637:SF5 | PFAM:PF08839 | PFAM:PF16679 | SEG:seg |
| SMART:SM01075 | SUPFAM:SSF46785 | UniParc:UPI000296269A | UniProt:M0RGN4 | MapMan:13.2.1.3 | : |
Description
CDT1A - Putative DNA replication initiation protein, expressed [Source:GMGC_GENE;Acc:GSMUA_Achr10G09080_001]
Coordinates
chr10:-:19075533..19079049
Molecular Weight (calculated)
60810.1 Da
IEP (calculated)
9.278
GRAVY (calculated)
-0.503
Length
545 amino acids
Sequence
(BLAST)
(BLAST)
001: MDSDARPRPP ISAGKRPDRP LESPAKGTSM ADQIWTPEKP ARLPRRSGNR SIAFSVKEVR KVALGLQTAA DRPDHSRSGN DDDLQSVEQQ LGASSVPGSS
101: PKSSKARGVI KLPEKYEILC EFFNCMESSI RLLRLKGSMC TFANILSSIQ HLTERRFTYA HLAQLKYIMP EAIIIKKVIL HDEATCCMKP ELQVTLQVDA
201: VAKNINGKTE SGYSILRKVF RERIVGFNKE HPEGDDVPEE QLPHPFNQTK PSVLPIVSNA NAKLTCTKPS SSTTSHQQFS VPSHLSQSFQ RRFSRKFPTH
301: GSEQTPLMTF GKACPKDDLS VPLASSPSKC NLKPPIFRNS MLEGTPAKLV STPLRLMSNT PDMATPKRCR TTPSCDSPLS NKSVKRSTRT KLFMTPTKSA
401: KAGDEEYEDR SLSADDDVLN IIPESLLQSI KEKERKTAQE EEAGVSNAIR RQKLIASLPC IFDMILLIFQ SWKRSVMTKN ELIYKLLSNN CKIVDRGEVE
501: EQLKLLLELV PDWISEKIAY SGDILCCVTG SSNPEEIRRR LAEAE
101: PKSSKARGVI KLPEKYEILC EFFNCMESSI RLLRLKGSMC TFANILSSIQ HLTERRFTYA HLAQLKYIMP EAIIIKKVIL HDEATCCMKP ELQVTLQVDA
201: VAKNINGKTE SGYSILRKVF RERIVGFNKE HPEGDDVPEE QLPHPFNQTK PSVLPIVSNA NAKLTCTKPS SSTTSHQQFS VPSHLSQSFQ RRFSRKFPTH
301: GSEQTPLMTF GKACPKDDLS VPLASSPSKC NLKPPIFRNS MLEGTPAKLV STPLRLMSNT PDMATPKRCR TTPSCDSPLS NKSVKRSTRT KLFMTPTKSA
401: KAGDEEYEDR SLSADDDVLN IIPESLLQSI KEKERKTAQE EEAGVSNAIR RQKLIASLPC IFDMILLIFQ SWKRSVMTKN ELIYKLLSNN CKIVDRGEVE
501: EQLKLLLELV PDWISEKIAY SGDILCCVTG SSNPEEIRRR LAEAE
001: MSTPGSSRSI PFKSKKRLVM DSPSSKSQTG NPNPSSVALP TPEKPLENML SRSRNRSVAL SVKEIRQAAG SRRRSEDPVA SSAKSRLFFD SSSSSPSKRK
101: SSNKNAEKEK LPEKYENLGK FFEALDNSML LSKLRGSKPT FSNISKQIEH LTERRFCYSH LAQIKHILPE AIEIKRVLIH DETTCCMKPD LHVTLNADAV
201: EYNDKSKSES KKIALRKVFR ARLADFVKAH PQGDEVPEEP LPEPFNRRKP VENSNVEVKR VSSLMEEMAS IPASKLFSSP ITSTPVKTTS SLAKPTSSQI
301: NIAPTPTKPT STPAKQTLSE INILPTPVKP VSTLAKFPST PAIIDSTPVI TATPPEFAST PARLMSTSLA ARPLKRSNGH TNPDDISADP PTKLVRRSLS
401: LNFDSYPEDE RTMDFTDDIP IDQVPEEDVS SDDEILSILP DKLRHAIKEQ ERKAIEDQNP AISLAKRRRK MIACLPKLFN VIHYLIQSIR RWVITKEELV
501: HKIIAGHSDI TDRKEVEEQL ILLQEIVPEW MSEKKSSSGD VLVCINKLAS PLTIRSRLEE ENKQEMAPLL S
101: SSNKNAEKEK LPEKYENLGK FFEALDNSML LSKLRGSKPT FSNISKQIEH LTERRFCYSH LAQIKHILPE AIEIKRVLIH DETTCCMKPD LHVTLNADAV
201: EYNDKSKSES KKIALRKVFR ARLADFVKAH PQGDEVPEEP LPEPFNRRKP VENSNVEVKR VSSLMEEMAS IPASKLFSSP ITSTPVKTTS SLAKPTSSQI
301: NIAPTPTKPT STPAKQTLSE INILPTPVKP VSTLAKFPST PAIIDSTPVI TATPPEFAST PARLMSTSLA ARPLKRSNGH TNPDDISADP PTKLVRRSLS
401: LNFDSYPEDE RTMDFTDDIP IDQVPEEDVS SDDEILSILP DKLRHAIKEQ ERKAIEDQNP AISLAKRRRK MIACLPKLFN VIHYLIQSIR RWVITKEELV
501: HKIIAGHSDI TDRKEVEEQL ILLQEIVPEW MSEKKSSSGD VLVCINKLAS PLTIRSRLEE ENKQEMAPLL S
Arabidopsis Description
CDT1ACDT1-like protein a, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9SJW9]
SUBAcon: [plastid,nucleus]
SUBAcon: [plastid,nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.