Factsheet for Solyc06g008510.2.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus

Predictor Summary:

nucleus 4
plastid 3
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc01g006140.2.1
Solyc03g098250.2.1
Solyc06g008510.2.1
Solyc06g084250.2.1
Solyc09g065210.2.1
Solyc11g067110.1.1
Solyc11g067120.1.1
Solyc11g067130.1.1
Solyc11g067140.1.1
Solyc11g068480.1.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G31270.1	Solyc11g067110.1.1	AT1G08260.1	22773747
AT2G31270.1	Solyc11g067120.1.1	AT1G08260.1	22773747
AT2G31270.1	Solyc11g067130.1.1	AT1G08260.1	22773747
AT2G31270.1	Solyc11g067140.1.1	AT1G08260.1	22773747
AT2G31270.1	Solyc01g006140.2.1	AT2G31270.1	22773747
AT2G31270.1	Solyc06g008510.2.1	AT2G31270.1	22773747
AT2G31270.1	Solyc06g084250.2.1	AT5G13060.1	18818695
AT2G31270.1	Solyc09g065210.2.1	AT5G13060.1	18818695
AT2G31270.1	Solyc03g098250.2.1	AT5G22110.1	22773747
AT3G54710.1	Solyc11g067110.1.1	AT1G08260.1	22773747
AT3G54710.1	Solyc11g067120.1.1	AT1G08260.1	22773747
AT3G54710.1	Solyc11g067130.1.1	AT1G08260.1	22773747
AT3G54710.1	Solyc11g067140.1.1	AT1G08260.1	22773747
AT3G54710.1	Solyc11g068480.1.1	AT2G27470.1	22773747
AT3G54710.1	Solyc01g006140.2.1	AT3G54710.1	22773747
AT3G54710.1	Solyc06g008510.2.1	AT3G54710.1	22773747
AT3G54710.1	Solyc06g084250.2.1	AT5G13060.1	18818695
AT3G54710.1	Solyc09g065210.2.1	AT5G13060.1	18818695
AT3G54710.1	Solyc03g098250.2.1	AT5G22110.1	22773747

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400028257	Potato	nucleus, plastid	85.08	85.08
VIT_07s0005g03090.t01	Wine grape	nucleus	47.86	48.35
Solyc01g006140.2.1	Tomato	nucleus	44.77	45.63
CDX84793	Canola	nucleus, plastid	36.88	39.02
GSMUA_Achr10P...	Banana	nucleus	36.36	38.9
Bra022834.1-P	Field mustard	nucleus, plastid	36.71	38.84
CDY23948	Canola	nucleus, plastid	36.36	38.34
CDY24744	Canola	nucleus	38.25	38.05
CDY67450	Canola	cytosol	17.15	37.31
Bra018272.1-P	Field mustard	nucleus	37.56	37.31
CDY10780	Canola	nucleus	37.56	37.31
HORVU2Hr1G003370.11	Barley	cytosol	29.85	37.18
CDY15409	Canola	nucleus, plastid	31.56	37.1
AT2G31270.1	Thale cress	nucleus, plastid	36.19	36.95
KRH32170	Soybean	plastid	37.56	36.74
Bra014797.1-P	Field mustard	cytosol, plastid	28.3	35.87
CDX76137	Canola	cytosol, plastid	28.47	35.17
KRH19542	Soybean	nucleus	37.22	35.06
CDY13226	Canola	cytosol, plastid	28.64	35.01
CDX76134	Canola	cytosol, plastid	27.96	34.9
TraesCS2D01G023000.1	Wheat	cytosol, plastid	32.08	34.63
Zm00001d045354_P002	Maize	nucleus	33.96	34.55
TraesCS2D01G023500.1	Wheat	endoplasmic reticulum	25.73	34.32
EER89201	Sorghum	nucleus	33.62	34.09
AT3G54710.1	Thale cress	cytosol, plastid	28.3	33.95
Bra014795.1-P	Field mustard	cytosol	20.07	33.24
TraesCS2A01G022200.1	Wheat	plastid	32.76	33.05
TraesCS2B01G030600.1	Wheat	plastid	32.08	32.24
Os04t0185100-01	Rice	cytosol, mitochondrion, plastid	32.42	32.14
GSMUA_Achr8P03390_001	Banana	cytosol, nucleus, plastid	18.7	28.31
Solyc03g019960.2.1	Tomato	nucleus	21.96	27.18
HORVU4Hr1G047140.6	Barley	plastid	8.92	23.85
GSMUA_Achr9P25190_001	Banana	endoplasmic reticulum, vacuole	36.54	22.3

Protein Annotations

Gene3D:1.10.10.1420	MapMan:13.2.1.3	InterPro:CDT1_Gemini-bd-like	InterPro:Cdt1_C	GO:GO:0000076	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005737	GO:GO:0006139	GO:GO:0006259
GO:GO:0006260	GO:GO:0007049	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
GO:GO:0016043	GO:GO:0051276	UniProt:K4C3N1	PFAM:PF08839	PFAM:PF16679	PANTHER:PTHR28637
PANTHER:PTHR28637:SF5	SMART:SM01075	SUPFAM:SSF46785	EnsemblPlantsGene:Solyc06g008510.2	EnsemblPlants:Solyc06g008510.2.1	UniParc:UPI0002766729
InterPro:WH_DNA-bd_sf	SEG:seg	:	:	:	:

Description

No Description!

Coordinates

chr6:+:2402505..2405642

Molecular Weight (calculated)

64676.3 Da

IEP (calculated)

9.738

GRAVY (calculated)

-0.492

Length

583 amino acids

Sequence
(BLAST)

001: MESADAASST LLNTFKSKKK LQIGSDPDAS GAPSLDPWSS KTPEKTIVPP RRTRNRNAAF SLKDIRQAAQ KLRKPDPTRL NTQTDTSLSY VKTQMEEASA
101: AKPKKPVNPV KLPEKYKLLE EFFGGLVSSI RLLQLKGSST TFTNISAKVE CLTDRRFTYN HLAQVKFLLP EAIEIKKMLV FDERTTCMKP DLHITLNANG
201: VEGQKKLKSS SGTEQLRTVF SSRILDFFKS HPEGDDIPEE ELPGAFGVSK QELLTNTSSP AGAQLKEETL IGSMQKPPVA VSHLSQSFRR SFSHQASIGV
301: VGNLKQQTTV SQTSIPPVSE PQITNCPTNT SELLLTQTRT TRFSTQGVHS ATLQPSPLPA TPVKNTTNED GSCLLSAEST PAKLASTPAK LMSTTPLLQP
401: SKRCYMTPDG ESTESPRKLV RRPPPSRSLT FSTPVKSSKV TEETSRSREL STDDEIFDIL PENLLQSIRT KEQEALEELD PAISQAKWRK KMISILPKFF
501: DMIYFLFHSI NRSVITKEEL THKVISSHLA IADKREFEEL LRLLQEIAPE WIHEKLSSSG DLLLCVSKVS NADSIRTRIA EAK

Best Arabidopsis Sequence Match ( AT2G31270.1 )
(BLAST)

001: MSTPGSSRSI PFKSKKRLVM DSPSSKSQTG NPNPSSVALP TPEKPLENML SRSRNRSVAL SVKEIRQAAG SRRRSEDPVA SSAKSRLFFD SSSSSPSKRK
101: SSNKNAEKEK LPEKYENLGK FFEALDNSML LSKLRGSKPT FSNISKQIEH LTERRFCYSH LAQIKHILPE AIEIKRVLIH DETTCCMKPD LHVTLNADAV
201: EYNDKSKSES KKIALRKVFR ARLADFVKAH PQGDEVPEEP LPEPFNRRKP VENSNVEVKR VSSLMEEMAS IPASKLFSSP ITSTPVKTTS SLAKPTSSQI
301: NIAPTPTKPT STPAKQTLSE INILPTPVKP VSTLAKFPST PAIIDSTPVI TATPPEFAST PARLMSTSLA ARPLKRSNGH TNPDDISADP PTKLVRRSLS
401: LNFDSYPEDE RTMDFTDDIP IDQVPEEDVS SDDEILSILP DKLRHAIKEQ ERKAIEDQNP AISLAKRRRK MIACLPKLFN VIHYLIQSIR RWVITKEELV
501: HKIIAGHSDI TDRKEVEEQL ILLQEIVPEW MSEKKSSSGD VLVCINKLAS PLTIRSRLEE ENKQEMAPLL S

Arabidopsis Description

CDT1ACDT1-like protein a, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9SJW9]
SUBAcon: [plastid,nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.