Subcellular Localization
min:
: max
Winner_takes_all: cytosol, plastid
Predictor Summary:
Predictor Summary:
- nucleus 2
- plastid 3
- cytosol 2
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra014795.1-P | Field mustard | cytosol | 45.27 | 62.5 |
| CDY67450 | Canola | cytosol | 34.16 | 61.94 |
| Bra014797.1-P | Field mustard | cytosol, plastid | 56.79 | 60.0 |
| CDX76134 | Canola | cytosol, plastid | 57.2 | 59.53 |
| CDX76137 | Canola | cytosol, plastid | 56.79 | 58.47 |
| CDY13226 | Canola | cytosol, plastid | 57.2 | 58.28 |
| VIT_07s0005g03090.t01 | Wine grape | nucleus | 36.01 | 30.33 |
| AT2G31270.1 | Thale cress | nucleus, plastid | 34.57 | 29.42 |
| Solyc06g008510.2.1 | Tomato | nucleus, plastid | 33.95 | 28.3 |
| GSMUA_Achr10P... | Banana | nucleus | 31.69 | 28.26 |
| PGSC0003DMT400028257 | Potato | nucleus, plastid | 33.33 | 27.79 |
| KRH32170 | Soybean | plastid | 33.54 | 27.35 |
| HORVU2Hr1G003370.11 | Barley | cytosol | 25.1 | 26.07 |
| Solyc01g006140.2.1 | Tomato | nucleus | 30.04 | 25.52 |
| TraesCS2D01G023000.1 | Wheat | cytosol, plastid | 27.78 | 25.0 |
| KRH19542 | Soybean | nucleus | 31.48 | 24.72 |
| TraesCS2D01G023500.1 | Wheat | endoplasmic reticulum | 22.22 | 24.71 |
| EER89201 | Sorghum | nucleus | 29.01 | 24.52 |
| Zm00001d045354_P002 | Maize | nucleus | 28.4 | 24.08 |
| HORVU4Hr1G047140.6 | Barley | plastid | 10.7 | 23.85 |
| GSMUA_Achr8P03390_001 | Banana | cytosol, nucleus, plastid | 18.72 | 23.64 |
| TraesCS2B01G030600.1 | Wheat | plastid | 27.78 | 23.28 |
| TraesCS2A01G022200.1 | Wheat | plastid | 27.37 | 23.01 |
| Os04t0185100-01 | Rice | cytosol, mitochondrion, plastid | 27.78 | 22.96 |
| GSMUA_Achr9P25190_001 | Banana | endoplasmic reticulum, vacuole | 30.45 | 15.5 |
Protein Annotations
| Gene3D:1.10.10.1420 | MapMan:13.2.1.3 | EntrezGene:824636 | ProteinID:AEE79269.1 | EMBL:AJ421409 | ArrayExpress:AT3G54710 |
| EnsemblPlantsGene:AT3G54710 | RefSeq:AT3G54710 | TAIR:AT3G54710 | RefSeq:AT3G54710-TAIR-G | EnsemblPlants:AT3G54710.1 | TAIR:AT3G54710.1 |
| Symbol:ATCDT1B | Unigene:At.35086 | EMBL:BT029185 | ProteinID:CAB77591.1 | InterPro:CDT1_Gemini-bd-like | InterPro:Cdt1_C |
| GO:GO:0000076 | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0004693 | GO:GO:0005488 | GO:GO:0005515 |
| GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0005737 | GO:GO:0006139 |
| GO:GO:0006259 | GO:GO:0006260 | GO:GO:0007049 | GO:GO:0007275 | GO:GO:0008150 | GO:GO:0008152 |
| GO:GO:0009058 | GO:GO:0009658 | GO:GO:0009987 | GO:GO:0016043 | GO:GO:0016301 | GO:GO:0016740 |
| GO:GO:0048229 | GO:GO:0051276 | GO:GO:0070182 | RefSeq:NP_191031.1 | PFAM:PF08839 | PFAM:PF16679 |
| PO:PO:0000005 | PO:PO:0000293 | PANTHER:PTHR28637 | PANTHER:PTHR28637:SF5 | UniProt:Q9M1S9 | SMART:SM01075 |
| SUPFAM:SSF46785 | UniParc:UPI00000AABA9 | InterPro:WH_DNA-bd_sf | : | : | : |
Description
CDT1BCDT1-like protein b [Source:UniProtKB/Swiss-Prot;Acc:Q9M1S9]
Coordinates
chr3:+:20251812..20254323
Molecular Weight (calculated)
55022.2 Da
IEP (calculated)
4.733
GRAVY (calculated)
-0.539
Length
486 amino acids
Sequence
(BLAST)
(BLAST)
001: MSSSSKIDSE KPVMVSESLF STKTPIKTVK RQIFSSSPKP ESVIKLPERF EILEEFFNGL DTAIRLLKLK GSSTTYANIC PKIEYLTNRI FSYDHLAQMK
101: HIYPEAIELK RVLKFVEDTC CMKPRLHIKL NTDAIVVEDT ICGTKYMELR KVFHSKLVDF RKAHPKDEIP KELLPEPFNS PQRDSYSGIV SVGLGEPKLE
201: VGGFDVHMEE IEQEEQDVNK VIPDSTLSHI ESRIVETPVK DLSTPSKDLS TPIRLMSATP TLQLSKRCIE LTPEGGDDNS LRSTNSLARG PSRSLNFDTF
301: EEDAIEKDDI GNESDDKGIN YEEDGLLQSV KGPSRSLNFD TLEEETIVKD DISNESGDEK SNYEGDNASD DDSLLQSMIE RPKTEPEKHN LPQLVNLIHR
401: VFHSTNRTVI TKEELLYKII ANQINITDRR EVEEQLSLML QLVPDWISET KASSGDLLVR INKMSTAETV RARLEEATSH DISLIY
101: HIYPEAIELK RVLKFVEDTC CMKPRLHIKL NTDAIVVEDT ICGTKYMELR KVFHSKLVDF RKAHPKDEIP KELLPEPFNS PQRDSYSGIV SVGLGEPKLE
201: VGGFDVHMEE IEQEEQDVNK VIPDSTLSHI ESRIVETPVK DLSTPSKDLS TPIRLMSATP TLQLSKRCIE LTPEGGDDNS LRSTNSLARG PSRSLNFDTF
301: EEDAIEKDDI GNESDDKGIN YEEDGLLQSV KGPSRSLNFD TLEEETIVKD DISNESGDEK SNYEGDNASD DDSLLQSMIE RPKTEPEKHN LPQLVNLIHR
401: VFHSTNRTVI TKEELLYKII ANQINITDRR EVEEQLSLML QLVPDWISET KASSGDLLVR INKMSTAETV RARLEEATSH DISLIY
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.